Identification tag; Collection date; Length of genome; Name of genome; Location;
Mutations of genome (common mutations in red)
Mutations of associated ancestor genome (common mutations in red)
Identification tag of ancestor genome; Collection date; Length of genome; Name of genome; Location;
A1096G C1420T C3037T C14408T G14874T C18877T A23403G G25563T
MT810987 2020-04-05 29409 SARS-CoV-2/human/USA/SEARCH-0367-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A1096G C1420T C3037T C14408T G14874T C18877T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T A1096G C1420T C3037T C14408T G14874T C18877T A23403G G25563T
EPI_ISL_458250 2020-04-05 29903 hCoV-19/USA/CA-SR0367/2020 United States/California/San Diego
A1096G C3037T C14408T G14874T C18877T A23403G G25563T
MT811204 2020-04-15 29409 SARS-CoV-2/human/USA/SEARCH-0502-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A1096G C3037T C14408T G14874T C18877T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1096G C3037T C14408T G14874T C18877T A23403G G25563T
EPI_ISL_483186 2020-04-15 29865 hCoV-19/USA/CA-ALSR-0502-SAN/2020 United States/California/San Diego
MT811256 2020-04-15 29409 SARS-CoV-2/human/USA/SEARCH-0584-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A1096G C3037T C14408T G14874T C18877T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAA1- C241T A1096G C3037T C14408T G14874T C18877T A23403G G25563T
EPI_ISL_483240 2020-04-15 29898 hCoV-19/USA/CA-ALSR-0584-SAN/2020 United States/California/San Diego
MT811472 2020-04-19 29409 SARS-CoV-2/human/USA/SEARCH-1018-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A1096G C3037T C14408T G14874T C18877T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1096G C3037T C14408T G14874T C18877T A23403G G25563T
EPI_ISL_483465 2020-04-19 29865 hCoV-19/USA/CA-ALSR-1018-SAN/2020 United States/California/San Diego
MT810773 2020-04-22 29409 SARS-CoV-2/human/MEX/SEARCH-1699-TIJ/2020 Mexico/Tijuana/BajaCalifornia
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A1096G C3037T C14408T G14874T C18877T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T A1096G C3037T C14408T G14874T C18877T A23403G G25563T
EPI_ISL_496360 2020-04-22 29899 hCoV-19/Mexico/ALSR-1699/2020 Mexico/Baja California/Tijuana
MT811480 2020-04-24 29409 SARS-CoV-2/human/USA/SEARCH-1029-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A1096G C3037T C14408T G14874T C18877T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1096G C3037T C14408T G14874T C18877T A23403G G25563T
EPI_ISL_483473 2020-04-24 29865 hCoV-19/USA/CA-ALSR-1029-SAN/2020 United States/California/San Diego
MT810867 2020-05-14 29409 SARS-CoV-2/human/USA/SEARCH-1573-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A1096G C3037T C14408T G14874T C18877T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1096G C3037T C14408T G14874T C18877T A23403G G25563T
EPI_ISL_494666 2020-05-14 29865 hCoV-19/USA/CA-ALSR-1573/2020 United States/California/San Diego
A1096G C3037T C14408T G14874T G15982T C18877T A22678G A23403G G24914T G25563T
MT811222 2020-05-04 29409 SARS-CoV-2/human/USA/SEARCH-0532-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A1096G C3037T C14408T G14874T G15982T C18877T A22678G A23403G G24914T G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1096G C3037T C14408T G14874T G15982T C18877T A22678G A23403G G24914T G25563T
EPI_ISL_483206 2020-05-04 29864 hCoV-19/USA/CA-ALSR-0532-SAN/2020 United States/California/San Diego
MT811310 2020-05-04 29409 SARS-CoV-2/human/USA/SEARCH-0680-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A1096G C3037T C14408T G14874T G15982T C18877T A22678G A23403G G24914T G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1096G C3037T C14408T G14874T G15982T C18877T A22678G A23403G G24914T G25563T
EPI_ISL_483297 2020-05-04 29863 hCoV-19/USA/CA-ALSR-0680-SAN/2020 United States/California/San Diego
A1096G C3037T C14408T G14874T G15982T C18877T A23403G G24914T G25563T
MT810951 2020-04-26 29409 SARS-CoV-2/human/USA/SEARCH-0237-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A1096G C3037T C14408T G14874T G15982T C18877T A23403G G24914T G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T A1096G C3037T C14408T G14874T G15982T C18877T A23403G G24914T G25563T
EPI_ISL_437567 2020-04-26 29903 hCoV-19/USA/CA-SR0237/2020 United States/California/San Diego
A1386G C3037T C10156T C14408T A20268G A23403G T24076C C28854T
MT810662 2020-04-24 29409 SARS-CoV-2/human/USA/SEARCH-1203-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A1386G C3037T C10156T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T A1386G C3037T C10156T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_494435 2020-04-24 29903 hCoV-19/USA/CA-ALSR-1203/2020 United States/California/San Diego
A1386G C3037T G3971T G7393A C10156T C14408T A20268G C21595T A23403G T24076C C28854T
MT811494 2020-06-20 29409 SARS-CoV-2/human/USA/SEARCH-1058-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A1386G C3037T G3971T G7393A C10156T C14408T A20268G C21595T A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1386G C3037T G3971T G7393A C10156T C14408T A20268G C21595T A23403G T24076C C28854T
EPI_ISL_483489 2020-06-20 29864 hCoV-19/USA/CA-ALSR-1058-SAN/2020 United States/California/San Diego
A1486C C3037T G4925T T8426C C9943T G13617T C14408T C16887T C17285T G18816T A20268G A23403G T24076C G27226T C28854T G29468A
MT811483 2020-06-21 29409 SARS-CoV-2/human/USA/SEARCH-1036-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A1486C C3037T G4925T T8426C C9943T G13617T C14408T C16887T C17285T G18816T A20268G A23403G T24076C G27226T C28854T G29468A CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1486C C3037T G4925T T8426C C9943T G13617T C14408T C16887T C17285T G18816T A20268G A23403G T24076C G27226T C28854T G29468A
EPI_ISL_483476 2020-06-21 29864 hCoV-19/USA/CA-ALSR-1036-SAN/2020 United States/California/San Diego
A1486C C3037T G4925T T8426C G13617T C14408T C16887T C17285T G18816T A20268G A23403G T24076C G27226T C28854T G29468A
MT811498 2020-06-20 29409 SARS-CoV-2/human/USA/SEARCH-1062-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A1486C C3037T G4925T T8426C G13617T C14408T C16887T C17285T G18816T A20268G A23403G T24076C G27226T C28854T G29468A CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1486C C3037T G4925T T8426C G13617T C14408T C16887T C17285T G18816T A20268G A23403G T24076C G27226T C28854T G29468A
EPI_ISL_483493 2020-06-20 29864 hCoV-19/USA/CA-ALSR-1062-SAN/2020 United States/California/San Diego
A1815G C3037T C14408T A20268G A23403G C28854T
MT810616 2020-04-27 29409 SARS-CoV-2/human/USA/SEARCH-1144-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A1815G C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1815G C3037T C14408T A20268G A23403G C28854T
EPI_ISL_494389 2020-04-27 29863 hCoV-19/USA/CA-ALSR-1144/2020 United States/California/San Diego
MT810628 2020-04-28 29409 SARS-CoV-2/human/USA/SEARCH-1158-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A1815G C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1815G C3037T C14408T A20268G A23403G C28854T
EPI_ISL_494401 2020-04-28 29854 hCoV-19/USA/CA-ALSR-1158/2020 United States/California/San Diego
MT810630 2020-04-28 29409 SARS-CoV-2/human/USA/SEARCH-1160-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A1815G C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
A1- C241T A1815G C3037T C14408T A20268G A23403G C28854T
EPI_ISL_494403 2020-04-28 29902 hCoV-19/USA/CA-ALSR-1160/2020 United States/California/San Diego
A1900G C3037T C10778T C14408T C20555A A23403G GGG28881AAC
MT811014 2020-04-20 29409 SARS-CoV-2/human/USA/SEARCH-0408-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A1900G C3037T C10778T C14408T C20555A A23403G GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T A1900G C3037T C10778T C14408T C20555A A23403G GGG28881AAC
EPI_ISL_458278 2020-04-20 29903 hCoV-19/USA/CA-SR0408/2020 United States/California/San Diego
A2015G C3037T A6360G C9541T G11083T C14408T C20629T A23403G C24502A GGG28881AAC
MT811489 2020-06-21 29409 SARS-CoV-2/human/USA/SEARCH-1049-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A2015G C3037T A6360G C9541T G11083T C14408T C20629T A23403G C24502A GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTA1- C241T A2015G C3037T A6360G C9541T G11083T C14408T C20629T A23403G C24502A GGG28881AAC
EPI_ISL_483482 2020-06-21 29877 hCoV-19/USA/CA-ALSR-1049-SAN/2020 United States/California/San Diego
A2240G C8782T G13007A C17747T A17858G C18060T A24694T C25207T T28144C
MT811187 2020-04-10 29409 SARS-CoV-2/human/USA/SEARCH-0479-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A2240G C8782T G13007A C17747T A17858G C18060T A24694T C25207T T28144C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
A2240G C8782T G13007A C17747T A17858G C18060T A24694T C25207T T28144C
EPI_ISL_483168 2020-04-10 29903 hCoV-19/USA/CA-ALSR-0479-SAN/2020 United States/California/San Diego
MT811360 2020-04-10 29409 SARS-CoV-2/human/USA/SEARCH-0772-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A2240G C8782T G13007A C17747T A17858G C18060T A24694T C25207T T28144C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAA1- A2240G C8782T G13007A C17747T A17858G C18060T A24694T C25207T T28144C
EPI_ISL_483348 2020-04-10 29898 hCoV-19/USA/CA-ALSR-0772-SAN/2020 United States/California/San Diego
A2420C G4105T C8782T C17747T A17858G C18060T A22005G T28144C
MT811205 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-0503-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A2420C G4105T C8782T C17747T A17858G C18060T A22005G T28144C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- A2420C G4105T C8782T C17747T A17858G C18060T A22005G T28144C
EPI_ISL_483187 2020-04-02 29858 hCoV-19/USA/CA-ALSR-0503-SAN/2020 United States/California/San Diego
A3046G C8782T A16467G G16975T C17747T A17858G C18060T C23185T T28144C
MT810508 2020-03-14 29409 SARS-CoV-2/human/USA/SEARCH-1499-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A3046G C8782T A16467G G16975T C17747T A17858G C18060T C23185T T28144C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- A3046G C8782T A16467G G16975T C17747T A17858G C18060T C23185T T28144C
EPI_ISL_494624 2020-03-14 29856 hCoV-19/USA/CA-ALSR-1499/2020 United States/California/San Diego
A6042G C8782T T9477A C14805T GTA19518- G25979T T28144C C28657T C28863T
MT811322 2020-03-28 29406 SARS-CoV-2/human/USA/SEARCH-0698-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A6042G C8782T T9477A C14805T GTA19518- G25979T T28144C C28657T C28863T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- A6042G C8782T T9477A C14805T GTA19518- G25979T T28144C C28657T C28863T
EPI_ISL_483309 2020-03-28 29851 hCoV-19/USA/CA-ALSR-0698-SAN/2020 United States/California/San Diego
A873G C1059T T1211G C3037T C14408T C21575T A23403G G24985T G25563T C27964T
MT810506 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-1497-CS1/2020 United States/Cruise_Ship_1/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- A873G C1059T T1211G C3037T C14408T C21575T A23403G G24985T G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T A873G C1059T T1211G C3037T C14408T C21575T A23403G G24985T G25563T C27964T
EPI_ISL_494622 2020-04-01 29903 hCoV-19/USA/CA-ALSR-1497/2020 United States/California
AAGTCATTT686- C1059T C3037T A5843G T7919G C8772T C14408T G17014T C18788T A23403G G25563T
MT810845 2020-05-11 29400 SARS-CoV-2/human/USA/SEARCH-1527-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- AAGTCATTT686- C1059T C3037T A5843G T7919G C8772T C14408T G17014T C18788T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T AAGTCATTT686- C1059T C3037T A5843G T7919G C8772T C14408T G17014T C18788T A23403G G25563T
EPI_ISL_494644 2020-05-11 29854 hCoV-19/USA/CA-ALSR-1527/2020 United States/California/San Diego
MT810853 2020-05-11 29400 SARS-CoV-2/human/USA/SEARCH-1543-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- AAGTCATTT686- C1059T C3037T A5843G T7919G C8772T C14408T G17014T C18788T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T AAGTCATTT686- C1059T C3037T A5843G T7919G C8772T C14408T G17014T C18788T A23403G G25563T
EPI_ISL_494652 2020-05-11 29855 hCoV-19/USA/CA-ALSR-1543/2020 United States/California/San Diego
AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T A26433G
MT811214 2020-04-01 29400 SARS-CoV-2/human/USA/SEARCH-0518-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T A26433G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T A26433G
EPI_ISL_483197 2020-04-01 29855 hCoV-19/USA/CA-ALSR-0518-SAN/2020 United States/California/San Diego
AAGTCATTT686- C1059T C3037T C7765T C10188T C14408T A23403G T24982C G25563T C27964T
MT811736 2020-04-07 29400 SARS-CoV-2/human/USA/SEARCH-0306-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- AAGTCATTT686- C1059T C3037T C7765T C10188T C14408T A23403G T24982C G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T AAGTCATTT686- C1059T C3037T C7765T C10188T C14408T A23403G T24982C G25563T C27964T
EPI_ISL_445161 2020-04-07 29894 hCoV-19/USA/LA-SR0306/2020 United States/Louisiana/New Orleans
AAGTCATTT686- C1059T G1944A G2808A C3037T C9967T C14408T A23403G G25563T A26433G
MT811370 2020-04-07 29400 SARS-CoV-2/human/USA/SEARCH-0788-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- AAGTCATTT686- C1059T G1944A G2808A C3037T C9967T C14408T A23403G G25563T A26433G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T AAGTCATTT686- C1059T G1944A G2808A C3037T C9967T C14408T A23403G G25563T A26433G
EPI_ISL_483358 2020-04-07 29845 hCoV-19/USA/CA-ALSR-0788-SAN/2020 United States/California/San Diego
AAGTCATTT686- C1059T G1944A G2808A C3037T C9967T G14055T C14408T A23403G G25563T A26433G
MT811273 2020-04-07 29400 SARS-CoV-2/human/USA/SEARCH-0616-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- AAGTCATTT686- C1059T G1944A G2808A C3037T C9967T G14055T C14408T A23403G G25563T A26433G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T AAGTCATTT686- C1059T G1944A G2808A C3037T C9967T G14055T C14408T A23403G G25563T A26433G
EPI_ISL_483260 2020-04-07 29855 hCoV-19/USA/CA-ALSR-0616-SAN/2020 United States/California/San Diego
AAGTCATTT686- C1059T G2808A C3037T G3582T C14408T A23403G G25563T A26433G
MT811694 2020-03-31 29400 SARS-CoV-2/human/USA/SEARCH-0264-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- AAGTCATTT686- C1059T G2808A C3037T G3582T C14408T A23403G G25563T A26433G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T AAGTCATTT686- C1059T G2808A C3037T G3582T C14408T A23403G G25563T A26433G
EPI_ISL_445119 2020-03-31 29894 hCoV-19/USA/LA-SR0264/2020 United States/Louisiana/New Orleans
AAGTCATTT686- C3037T A4584G C9438T C14408T C16616T A20268G A23403G C28854T
MT811285 2020-04-27 29400 SARS-CoV-2/human/USA/SEARCH-0637-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- AAGTCATTT686- C3037T A4584G C9438T C14408T C16616T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATT1- C241T AAGTCATTT686- C3037T A4584G C9438T C14408T C16616T A20268G A23403G C28854T
EPI_ISL_483272 2020-04-27 29891 hCoV-19/USA/CA-ALSR-0637-SAN/2020 United States/California/San Diego
MT811425 2020-04-27 29400 SARS-CoV-2/human/USA/SEARCH-0928-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- AAGTCATTT686- C3037T A4584G C9438T C14408T C16616T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T AAGTCATTT686- C3037T A4584G C9438T C14408T C16616T A20268G A23403G C28854T
EPI_ISL_483418 2020-04-27 29864 hCoV-19/USA/CA-ALSR-0928-SAN/2020 United States/California/San Diego
AAGTCATTT686- C3037T G5164A G10642T C13458T C14408T G21255C A23403G C25614T C27476T GGG28881AAC G28960T G28979A
MT810085 2020-06-23 29400 SARS-CoV-2/human/USA/SEARCH-1379-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- AAGTCATTT686- C3037T G5164A G10642T C13458T C14408T G21255C A23403G C25614T C27476T GGG28881AAC G28960T G28979A CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T AAGTCATTT686- C3037T G5164A G10642T C13458T C14408T G21255C A23403G C25614T C27476T GGG28881AAC G28960T G28979A
EPI_ISL_494570 2020-06-23 29890 hCoV-19/USA/CA-ALSR-1379/2020 United States/California/San Diego
C1059T A2018G C3037T C14214T C14408T A23403G G25563T
MT811165 2020-03-14 29409 SARS-CoV-2/human/USA/SEARCH-0098-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T A2018G C3037T C14214T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T A2018G C3037T C14214T C14408T A23403G G25563T
EPI_ISL_445097 2020-03-14 29903 hCoV-19/USA/CA-SR0098/2020 United States/California/San Diego
C1059T A2018G C3037T C14408T A23403G G25563T
MT810562 2020-03-13 29409 SARS-CoV-2/human/USA/SEARCH-0430-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T A2018G C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T A2018G C3037T C14408T A23403G G25563T
EPI_ISL_467960 2020-03-13 29903 hCoV-19/USA/CA-SR0430/2020 United States/California/San Diego
MT810554 2020-03-18 29409 SARS-CoV-2/human/USA/SEARCH-0418-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T A2018G C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T A2018G C3037T C14408T A23403G G25563T
EPI_ISL_467952 2020-03-18 29903 hCoV-19/USA/CA-SR0418/2020 United States/California/San Diego
MT810557 2020-03-18 29409 SARS-CoV-2/human/USA/SEARCH-0424-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T A2018G C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T A2018G C3037T C14408T A23403G G25563T
EPI_ISL_467955 2020-03-18 29903 hCoV-19/USA/CA-SR0424/2020 United States/California/San Diego
MT810957 2020-03-22 29409 SARS-CoV-2/human/USA/SEARCH-0250-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T A2018G C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T A2018G C3037T C14408T A23403G G25563T
EPI_ISL_437560 2020-03-22 29903 hCoV-19/USA/CA-SR0250/2020 United States/California/San Diego
C1059T A2647G A2712G C3037T C14408T A23403G G25563T C26801T
MT811230 2020-04-30 29409 SARS-CoV-2/human/USA/SEARCH-0547-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T A2647G A2712G C3037T C14408T A23403G G25563T C26801T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATAC1- C92T C241T C1059T A2647G A2712G C3037T C14408T A23403G G25563T C26801T
EPI_ISL_483214 2020-04-30 29888 hCoV-19/USA/CA-ALSR-0547-IPL/2020 United States/California/Imperial
MT811339 2020-05-04 29409 SARS-CoV-2/human/USA/SEARCH-0725-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T A2647G A2712G C3037T C14408T A23403G G25563T C26801T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C92T C241T C1059T A2647G A2712G C3037T C14408T A23403G G25563T C26801T
EPI_ISL_483326 2020-05-04 29866 hCoV-19/USA/CA-ALSR-0725-IPL/2020 United States/California/Imperial
C1059T A2647G C3037T C14408T A23403G G25563T
MT811216 2020-04-07 29409 SARS-CoV-2/human/USA/SEARCH-0521-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T A2647G C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T A2647G C3037T C14408T A23403G G25563T
EPI_ISL_483199 2020-04-07 29854 hCoV-19/USA/CA-ALSR-0521-IPL/2020 United States/California/Imperial
MT811368 2020-04-07 29409 SARS-CoV-2/human/USA/SEARCH-0786-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T A2647G C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAA1- C21T C241T C1059T A2647G C3037T C14408T A23403G G25563T
EPI_ISL_483356 2020-04-07 29898 hCoV-19/USA/CA-ALSR-0786-IPL/2020 United States/California/Imperial
C1059T A2647G G2809T C3037T C14408T T17687C A23403G G25563T C25886T
MT811259 2020-04-15 29409 SARS-CoV-2/human/USA/SEARCH-0588-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T A2647G G2809T C3037T C14408T T17687C A23403G G25563T C25886T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C1059T A2647G G2809T C3037T C14408T T17687C A23403G G25563T C25886T
EPI_ISL_483244 2020-04-15 29899 hCoV-19/USA/CA-ALSR-0588-IPL/2020 United States/California/Imperial
C1059T A2745C C3037T C14408T A23403G G25563T C27964T
MT811659 2020-03-27 29409 SARS-CoV-2/human/USA/SEARCH-0145-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T A2745C C3037T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T A2745C C3037T C14408T A23403G G25563T C27964T
EPI_ISL_435449 2020-03-27 29903 hCoV-19/USA/LA-SR0145/2020 United States/Louisiana/New Orleans
C1059T C1191T C3037T C10188T C14408T A23403G T24982C G25563T C27964T
MT811698 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-0268-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1191T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C1191T C3037T C10188T C14408T A23403G T24982C G25563T C27964T
EPI_ISL_445123 2020-04-01 29903 hCoV-19/USA/LA-SR0268/2020 United States/Louisiana/New Orleans
C1059T C1593T C3037T C10319T C14408T A23403G G25563T C27964T C29375T
MT810909 2020-05-19 29409 SARS-CoV-2/human/USA/SEARCH-1641-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1593T C3037T C10319T C14408T A23403G G25563T C27964T C29375T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1593T C3037T C10319T C14408T A23403G G25563T C27964T C29375T
EPI_ISL_494708 2020-05-19 29865 hCoV-19/USA/CA-ALSR-1641/2020 United States/California/San Diego
C1059T C1594T C3037T C14408T C16762T A23403G G25563T G25660T
MT810614 2020-04-28 29409 SARS-CoV-2/human/USA/SEARCH-1142-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1594T C3037T C14408T C16762T A23403G G25563T G25660T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C1594T C3037T C14408T C16762T A23403G G25563T G25660T
EPI_ISL_494387 2020-04-28 29854 hCoV-19/USA/CA-ALSR-1142/2020 United States/California/San Diego
C1059T C1758T C3037T C5183T C12534T C14408T G16795T A22320G A23403G G25563T
MT811504 2020-06-22 29409 SARS-CoV-2/human/USA/SEARCH-1070-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1758T C3037T C5183T C12534T C14408T G16795T A22320G A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCT1- C241T C1059T C1758T C3037T C5183T C12534T C14408T G16795T A22320G A23403G G25563T
EPI_ISL_483499 2020-06-22 29886 hCoV-19/USA/CA-ALSR-1070-SAN/2020 United States/California/San Diego
C1059T C1812T C3037T C14408T A23403G G25563T
MT811353 2020-04-11 29409 SARS-CoV-2/human/USA/SEARCH-0761-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1812T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1812T C3037T C14408T A23403G G25563T
EPI_ISL_483340 2020-04-11 29849 hCoV-19/USA/CA-ALSR-0761-IPL/2020 United States/California/Imperial
C1059T C1887T A2205C C3037T C14408T C21575T A23403G G25563T C28708T
MT810869 2020-04-03 29409 SARS-CoV-2/human/USA/SEARCH-1578-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T A2205C C3037T C14408T C21575T A23403G G25563T C28708T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C1887T A2205C C3037T C14408T C21575T A23403G G25563T C28708T
EPI_ISL_494668 2020-04-03 29854 hCoV-19/USA/CA-ALSR-1578/2020 United States/California/San Diego
C1059T C1887T C3037T C11704T C14408T A23403G G25563T
MT811001 2020-04-10 29409 SARS-CoV-2/human/USA/SEARCH-0386-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C11704T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C1887T C3037T C11704T C14408T A23403G G25563T
EPI_ISL_458265 2020-04-10 29903 hCoV-19/USA/CA-SR0386/2020 United States/California/San Diego
C1059T C1887T C3037T C13667T C14408T C16457T A23403G G25563T
MT811409 2020-04-23 29409 SARS-CoV-2/human/USA/SEARCH-0849-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C13667T C14408T C16457T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1887T C3037T C13667T C14408T C16457T A23403G G25563T
EPI_ISL_483397 2020-04-23 29865 hCoV-19/USA/CA-ALSR-0849-SAN/2020 United States/California/San Diego
C1059T C1887T C3037T C14408T A16797G A23403G G25563T
MT810980 2020-04-20 29409 SARS-CoV-2/human/USA/SEARCH-0358-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T A16797G A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C1887T C3037T C14408T A16797G A23403G G25563T
EPI_ISL_458242 2020-04-20 29903 hCoV-19/USA/CA-SR0358/2020 United States/California/San Diego
C1059T C1887T C3037T C14408T A17615G A23403G G25563T
MT811179 2020-03-28 29409 SARS-CoV-2/human/USA/SEARCH-0128-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T A17615G A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C1887T C3037T C14408T A17615G A23403G G25563T
EPI_ISL_445113 2020-03-28 29903 hCoV-19/USA/CA-SR0128/2020 United States/California/San Diego
MT811434 2020-03-28 29409 SARS-CoV-2/human/USA/SEARCH-0943-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T A17615G A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
AT1- C241T C1059T C1887T C3037T C14408T A17615G A23403G G25563T
EPI_ISL_483427 2020-03-28 29901 hCoV-19/USA/CA-ALSR-0943-SAN/2020 United States/California/San Diego
C1059T C1887T C3037T C14408T A23403G G25563T
MT810500 2020-03-16 29409 SARS-CoV-2/human/USA/SEARCH-1419-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C1887T C3037T C14408T A23403G G25563T
EPI_ISL_494592 2020-03-16 29862 hCoV-19/USA/CA-ALSR-1419/2020 United States/California/San Diego
MT811162 2020-03-17 29409 SARS-CoV-2/human/USA/SEARCH-0094-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C1887T C3037T C14408T A23403G G25563T
EPI_ISL_445094 2020-03-17 29903 hCoV-19/USA/CA-SR0094/2020 United States/California/San Diego
MT810528 2020-03-25 29409 SARS-CoV-2/human/USA/SEARCH-1662-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C1887T C3037T C14408T A23403G G25563T
EPI_ISL_494723 2020-03-25 29854 hCoV-19/USA/CA-ALSR-1662/2020 United States/California/San Diego
MT810549 2020-03-25 29409 SARS-CoV-2/human/USA/SEARCH-1687-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGT1- C241T C1059T C1887T C3037T C14408T A23403G G25563T
EPI_ISL_494744 2020-03-25 29894 hCoV-19/USA/CA-ALSR-1687/2020 United States/California/San Diego
MT811317 2020-03-27 29409 SARS-CoV-2/human/USA/SEARCH-0689-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAA1- C241T C1059T C1887T C3037T C14408T A23403G G25563T
EPI_ISL_483304 2020-03-27 29897 hCoV-19/USA/CA-ALSR-0689-SAN/2020 United States/California/San Diego
MT810924 2020-03-28 29409 SARS-CoV-2/human/USA/SEARCH-0188-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C1887T C3037T C14408T A23403G G25563T
EPI_ISL_437592 2020-03-28 29903 hCoV-19/USA/CA-SR0188/2020 United States/California/San Diego
MT810639 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-1171-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACC1- C241T C1059T C1887T C3037T C14408T A23403G G25563T
EPI_ISL_494412 2020-04-01 29887 hCoV-19/USA/CA-ALSR-1171/2020 United States/California
MT811015 2020-04-11 29409 SARS-CoV-2/human/USA/SEARCH-0409-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C1887T C3037T C14408T A23403G G25563T
EPI_ISL_458279 2020-04-11 29903 hCoV-19/USA/CA-SR0409/2020 United States/California/San Diego
MT810981 2020-04-12 29409 SARS-CoV-2/human/USA/SEARCH-0359-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C1887T C3037T C14408T A23403G G25563T
EPI_ISL_458243 2020-04-12 29903 hCoV-19/USA/CA-SR0359/2020 United States/California/San Diego
MT810988 2020-04-15 29409 SARS-CoV-2/human/USA/SEARCH-0368-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C1887T C3037T C14408T A23403G G25563T
EPI_ISL_458251 2020-04-15 29903 hCoV-19/USA/CA-SR0368/2020 United States/California/San Diego
MT810892 2020-04-23 29409 SARS-CoV-2/human/USA/SEARCH-1620-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C1887T C3037T C14408T A23403G G25563T
EPI_ISL_494691 2020-04-23 29854 hCoV-19/USA/CA-ALSR-1620/2020 United States/California/San Diego
MT811228 2020-04-24 29409 SARS-CoV-2/human/USA/SEARCH-0541-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C1059T C1887T C3037T C14408T A23403G G25563T
EPI_ISL_483212 2020-04-24 29899 hCoV-19/USA/CA-ALSR-0541-SAN/2020 United States/California/San Diego
MT811304 2020-04-24 29409 SARS-CoV-2/human/USA/SEARCH-0671-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C1887T C3037T C14408T A23403G G25563T
EPI_ISL_483291 2020-04-24 29862 hCoV-19/USA/CA-ALSR-0671-SAN/2020 United States/California/San Diego
MT810489 2020-05-07 29409 SARS-CoV-2/human/USA/SEARCH-1393-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1887T C3037T C14408T A23403G G25563T
EPI_ISL_494581 2020-05-07 29864 hCoV-19/USA/CA-ALSR-1393/2020 United States/California/San Diego
C1059T C1887T C3037T C14408T A23403G G25563T C26873T
MT810963 2020-03-19 29409 SARS-CoV-2/human/USA/SEARCH-0258-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T C26873T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C1887T C3037T C14408T A23403G G25563T C26873T
EPI_ISL_437554 2020-03-19 29903 hCoV-19/USA/CA-SR0258/2020 United States/California/San Diego
C1059T C1887T C3037T C14408T A23403G G25563T C28775T
MT811325 2020-03-28 29409 SARS-CoV-2/human/USA/SEARCH-0701-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T C28775T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
A1- C241T C1059T C1887T C3037T C14408T A23403G G25563T C28775T
EPI_ISL_483312 2020-03-28 29902 hCoV-19/USA/CA-ALSR-0701-SAN/2020 United States/California/San Diego
C1059T C1887T C3037T C14408T A23403G G25563T T25842C
MT811375 2020-04-04 29409 SARS-CoV-2/human/USA/SEARCH-0795-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T T25842C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C1887T C3037T C14408T A23403G G25563T T25842C
EPI_ISL_483363 2020-04-04 29858 hCoV-19/USA/CA-ALSR-0795-SAN/2020 United States/California/San Diego
C1059T C1887T C3037T C14408T C15346T C19269T A23403G G25563T
MT811182 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0135-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T C15346T C19269T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C1887T C3037T C14408T C15346T C19269T A23403G G25563T
EPI_ISL_445116 2020-03-31 29903 hCoV-19/USA/CA-SR0135/2020 United States/California/San Diego
C1059T C1887T C3037T C14408T C18713T A23403G G25563T
MT811357 2020-04-16 29409 SARS-CoV-2/human/USA/SEARCH-0766-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T C18713T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCT1- C241T C1059T C1887T C3037T C14408T C18713T A23403G G25563T
EPI_ISL_483345 2020-04-16 29886 hCoV-19/USA/CA-ALSR-0766-SAN/2020 United States/California/San Diego
C1059T C1887T C3037T C14408T G17347T A23403G G25563T
MT810823 2020-03-28 29409 SARS-CoV-2/human/USA/SEARCH-1443-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T G17347T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C1887T C3037T C14408T G17347T A23403G G25563T
EPI_ISL_494605 2020-03-28 29872 hCoV-19/USA/CA-ALSR-1443/2020 United States/California/San Diego
C1059T C1887T C3037T C14408T G21220T A23403G G25563T
MT811324 2020-03-28 29409 SARS-CoV-2/human/USA/SEARCH-0700-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T G21220T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1887T C3037T C14408T G21220T A23403G G25563T
EPI_ISL_483311 2020-03-28 29864 hCoV-19/USA/CA-ALSR-0700-SAN/2020 United States/California/San Diego
MT811389 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0815-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T G21220T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C1887T C3037T C14408T G21220T A23403G G25563T
EPI_ISL_483377 2020-03-30 29877 hCoV-19/USA/CA-ALSR-0815-SAN/2020 United States/California/San Diego
C1059T C1887T C3037T C14408T G23282T A23403G G25563T
MT811321 2020-03-26 29409 SARS-CoV-2/human/USA/SEARCH-0697-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T G23282T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGG1- C241T C1059T C1887T C3037T C14408T G23282T A23403G G25563T
EPI_ISL_483308 2020-03-26 29895 hCoV-19/USA/CA-ALSR-0697-SAN/2020 United States/California/San Diego
C1059T C1887T C3037T C14408T T16993C A23403G G25563T
MT811006 2020-04-04 29409 SARS-CoV-2/human/USA/SEARCH-0395-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C14408T T16993C A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C1887T C3037T C14408T T16993C A23403G G25563T
EPI_ISL_458270 2020-04-04 29903 hCoV-19/USA/CA-SR0395/2020 United States/California/San Diego
C1059T C1887T C3037T C3775T C14408T A23403G G25563T T25842C
MT810877 2020-04-22 29409 SARS-CoV-2/human/USA/SEARCH-1588-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C3775T C14408T A23403G G25563T T25842C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1887T C3037T C3775T C14408T A23403G G25563T T25842C
EPI_ISL_494676 2020-04-22 29864 hCoV-19/USA/CA-ALSR-1588/2020 United States/California/San Diego
C1059T C1887T C3037T C5956T C14408T A17615G A23403G G25563T
MT810816 2020-03-27 29409 SARS-CoV-2/human/USA/SEARCH-1432-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C5956T C14408T A17615G A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAG1- C241T C1059T C1887T C3037T C5956T C14408T A17615G A23403G G25563T
EPI_ISL_494598 2020-03-27 29896 hCoV-19/USA/CA-ALSR-1432/2020 United States/California/San Diego
MT811334 2020-03-27 29409 SARS-CoV-2/human/USA/SEARCH-0718-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C5956T C14408T A17615G A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C1059T C1887T C3037T C5956T C14408T A17615G A23403G G25563T
EPI_ISL_483321 2020-03-27 29899 hCoV-19/USA/CA-ALSR-0718-SAN/2020 United States/California/San Diego
C1059T C1887T C3037T C6070T C14408T C19269T A23403G G25563T
MT810993 2020-04-07 29409 SARS-CoV-2/human/USA/SEARCH-0373-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T C6070T C14408T C19269T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C1887T C3037T C6070T C14408T C19269T A23403G G25563T
EPI_ISL_458256 2020-04-07 29903 hCoV-19/USA/CA-SR0373/2020 United States/California/San Diego
C1059T C1887T C3037T G11761T C14408T G22793T A23403G G25563T
MT810714 2020-05-03 29409 SARS-CoV-2/human/USA/SEARCH-1303-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T G11761T C14408T G22793T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C1887T C3037T G11761T C14408T G22793T A23403G G25563T
EPI_ISL_494487 2020-05-03 29854 hCoV-19/USA/CA-ALSR-1303/2020 United States/California/San Diego
MT810685 2020-05-05 29409 SARS-CoV-2/human/USA/SEARCH-1254-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T G11761T C14408T G22793T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCT1- C241T C1059T C1887T C3037T G11761T C14408T G22793T A23403G G25563T
EPI_ISL_494458 2020-05-05 29886 hCoV-19/USA/CA-ALSR-1254/2020 United States/California/San Diego
MT810679 2020-05-06 29409 SARS-CoV-2/human/USA/SEARCH-1231-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T G11761T C14408T G22793T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACC1- C241T C1059T C1887T C3037T G11761T C14408T G22793T A23403G G25563T
EPI_ISL_494452 2020-05-06 29887 hCoV-19/USA/CA-ALSR-1231/2020 United States/California/San Diego
MT810700 2020-05-06 29409 SARS-CoV-2/human/USA/SEARCH-1275-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1887T C3037T G11761T C14408T G22793T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1887T C3037T G11761T C14408T G22793T A23403G G25563T
EPI_ISL_494473 2020-05-06 29849 hCoV-19/USA/CA-ALSR-1275/2020 United States/California/San Diego
C1059T C1917T C3037T C14408T A23403G G25563T
MT810964 2020-03-25 29409 SARS-CoV-2/human/USA/SEARCH-0259-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C1917T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C1917T C3037T C14408T A23403G G25563T
EPI_ISL_437553 2020-03-25 29903 hCoV-19/USA/CA-SR0259/2020 United States/California/San Diego
C1059T C2189T C3037T C10319T C13667T C14408T A23403G G25563T C27964T
MT811722 2020-04-07 29409 SARS-CoV-2/human/USA/SEARCH-0292-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C2189T C3037T C10319T C13667T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C2189T C3037T C10319T C13667T C14408T A23403G G25563T C27964T
EPI_ISL_445147 2020-04-07 29903 hCoV-19/USA/LA-SR0292/2020 United States/Louisiana/New Orleans
C1059T C2623A C3037T C12473T C14408T A23403G G25563T C27964T
MT810546 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-1683-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C2623A C3037T C12473T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C2623A C3037T C12473T C14408T A23403G G25563T C27964T
EPI_ISL_494741 2020-04-02 29854 hCoV-19/USA/CA-ALSR-1683/2020 United States/California/San Diego
C1059T C2638T C3037T C13502T C14408T A23403G G25563T C27964T
MT811732 2020-04-08 29409 SARS-CoV-2/human/USA/SEARCH-0302-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C2638T C3037T C13502T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C2638T C3037T C13502T C14408T A23403G G25563T C27964T
EPI_ISL_445157 2020-04-08 29903 hCoV-19/USA/LA-SR0302/2020 United States/Louisiana/New Orleans
C1059T C3037T A3224G C10319T C14408T C21742T A23403G G25563T C27964T
MT811723 2020-04-07 29409 SARS-CoV-2/human/USA/SEARCH-0293-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T A3224G C10319T C14408T C21742T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T A3224G C10319T C14408T C21742T A23403G G25563T C27964T
EPI_ISL_445148 2020-04-07 29903 hCoV-19/USA/LA-SR0293/2020 United States/Louisiana/New Orleans
C1059T C3037T A3938C T8996G C14408T G17014T A23403G G25563T G26769T
MT811448 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0982-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T A3938C T8996G C14408T G17014T A23403G G25563T G26769T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C1059T C3037T A3938C T8996G C14408T G17014T A23403G G25563T G26769T
EPI_ISL_483441 2020-03-31 29899 hCoV-19/USA/CA-ALSR-0982-SAN/2020 United States/California/San Diego
C1059T C3037T A4197G C14408T C15720T C17550T A21583G A23403G A23899C G25563T
MT811518 2020-06-23 29409 SARS-CoV-2/human/USA/SEARCH-1086-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T A4197G C14408T C15720T C17550T A21583G A23403G A23899C G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A4197G C14408T C15720T C17550T A21583G A23403G A23899C G25563T
EPI_ISL_483513 2020-06-23 29865 hCoV-19/USA/CA-ALSR-1086-SAN/2020 United States/California/San Diego
C1059T C3037T A4197G C14408T C15720T C17550T A23403G G25563T
MT811499 2020-06-20 29409 SARS-CoV-2/human/USA/SEARCH-1063-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T A4197G C14408T C15720T C17550T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAA1- C241T C1059T C3037T A4197G C14408T C15720T C17550T A23403G G25563T
EPI_ISL_483494 2020-06-20 29897 hCoV-19/USA/CA-ALSR-1063-SAN/2020 United States/California/San Diego
C1059T C3037T A4198T C14408T T19791C A23403G G25563T C25710T
MT810930 2020-03-24 29409 SARS-CoV-2/human/USA/SEARCH-0197-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T A4198T C14408T T19791C A23403G G25563T C25710T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T A4198T C14408T T19791C A23403G G25563T C25710T
EPI_ISL_437586 2020-03-24 29903 hCoV-19/USA/CA-SR0197/2020 United States/California/San Diego
C1059T C3037T A8252G C14408T A23403G G25563T
MT810532 2020-03-24 29409 SARS-CoV-2/human/USA/SEARCH-1667-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T A8252G C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T A8252G C14408T A23403G G25563T
EPI_ISL_494727 2020-03-24 29858 hCoV-19/USA/CA-ALSR-1667/2020 United States/California/San Diego
MT810783 2020-03-27 29409 SARS-CoV-2/human/MEX/SEARCH-1709-TIJ/2020 Mexico/Tijuana/BajaCalifornia
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T A8252G C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
A1- C241T C1059T C3037T A8252G C14408T A23403G G25563T
EPI_ISL_496370 2020-03-27 29902 hCoV-19/Mexico/ALSR-1709/2020 Mexico/Baja California/Tijuana
MT810819 2020-03-27 29409 SARS-CoV-2/human/USA/SEARCH-1435-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T A8252G C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C1059T C3037T A8252G C14408T A23403G G25563T
EPI_ISL_494601 2020-03-27 29899 hCoV-19/USA/CA-ALSR-1435/2020 United States/California/San Diego
MT811336 2020-03-27 29409 SARS-CoV-2/human/USA/SEARCH-0721-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T A8252G C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C1059T C3037T A8252G C14408T A23403G G25563T
EPI_ISL_483323 2020-03-27 29874 hCoV-19/USA/CA-ALSR-0721-SAN/2020 United States/California/San Diego
MT810998 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-0382-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T A8252G C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T A8252G C14408T A23403G G25563T
EPI_ISL_458262 2020-04-01 29903 hCoV-19/USA/CA-SR0382/2020 United States/California/San Diego
MT811012 2020-04-06 29409 SARS-CoV-2/human/USA/SEARCH-0405-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T A8252G C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T A8252G C14408T A23403G G25563T
EPI_ISL_458276 2020-04-06 29903 hCoV-19/USA/CA-SR0405/2020 United States/California/San Diego
MT810992 2020-04-21 29409 SARS-CoV-2/human/USA/SEARCH-0372-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T A8252G C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
A39C C241T C1059T C3037T A8252G C14408T A23403G G25563T
EPI_ISL_458255 2020-04-21 29903 hCoV-19/USA/CA-SR0372/2020 United States/California/San Diego
MT810707 2020-05-01 29409 SARS-CoV-2/human/USA/SEARCH-1287-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T A8252G C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A8252G C14408T A23403G G25563T
EPI_ISL_494480 2020-05-01 29865 hCoV-19/USA/CA-ALSR-1287/2020 United States/California/San Diego
C1059T C3037T A8252G C14408T G15193A A23403G G25563T C25626G
MT810882 2020-04-26 29409 SARS-CoV-2/human/USA/SEARCH-1595-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T A8252G C14408T G15193A A23403G G25563T C25626G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T A8252G C14408T G15193A A23403G G25563T C25626G
EPI_ISL_494681 2020-04-26 29880 hCoV-19/USA/CA-ALSR-1595/2020 United States/California/San Diego
C1059T C3037T A8252G G11083T C14408T A23403G G25563T
MT811323 2020-03-28 29409 SARS-CoV-2/human/USA/SEARCH-0699-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T A8252G G11083T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T A8252G G11083T C14408T A23403G G25563T
EPI_ISL_483310 2020-03-28 29864 hCoV-19/USA/CA-ALSR-0699-SAN/2020 United States/California/San Diego
MT811436 2020-03-28 29409 SARS-CoV-2/human/USA/SEARCH-0945-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T A8252G G11083T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T A8252G G11083T C14408T A23403G G25563T
EPI_ISL_483429 2020-03-28 29854 hCoV-19/USA/CA-ALSR-0945-SAN/2020 United States/California/San Diego
C1059T C3037T A8771G C14408T C14818T C16762T A23403G G25563T
MT810720 2020-04-29 29409 SARS-CoV-2/human/USA/SEARCH-1320-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T A8771G C14408T C14818T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGT1- C241T C1059T C3037T A8771G C14408T C14818T C16762T A23403G G25563T
EPI_ISL_494492 2020-04-29 29894 hCoV-19/USA/CA-ALSR-1320/2020 United States/California/San Diego
C1059T C3037T C10188T C14408T A23403G T24982C G25563T C25886T C27509T C27964T
MT811710 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-0280-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C10188T C14408T A23403G T24982C G25563T C25886T C27509T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C25886T C27509T C27964T
EPI_ISL_445135 2020-04-01 29903 hCoV-19/USA/LA-SR0280/2020 United States/Louisiana/New Orleans
C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T
MT811712 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-0282-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T
EPI_ISL_445137 2020-04-01 29903 hCoV-19/USA/LA-SR0282/2020 United States/Louisiana/New Orleans
C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T C28697T
MT811726 2020-04-07 29409 SARS-CoV-2/human/USA/SEARCH-0296-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T C28697T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T C28697T TGGAAGAGCCCTAATG29793-
EPI_ISL_445151 2020-04-07 29887 hCoV-19/USA/LA-SR0296/2020 United States/Louisiana/New Orleans
C1059T C3037T C10188T G11083T C14408T A23403G T24982C G25563T C27964T
MT811660 2020-03-28 29409 SARS-CoV-2/human/USA/SEARCH-0146-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C10188T G11083T C14408T A23403G T24982C G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C10188T G11083T C14408T A23403G T24982C G25563T C27964T
EPI_ISL_435450 2020-03-28 29903 hCoV-19/USA/LA-SR0146/2020 United States/Louisiana/New Orleans
C1059T C3037T C10319T C13119T C14408T A23403G G25563T C27964T
MT811703 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-0273-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C10319T C13119T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C10319T C13119T C14408T A23403G G25563T C27964T
EPI_ISL_445128 2020-04-01 29903 hCoV-19/USA/LA-SR0273/2020 United States/Louisiana/New Orleans
C1059T C3037T C10319T C14408T A23403G CGATAC25493- G25563T T27322G C27964T
MT811669 2020-04-02 29403 SARS-CoV-2/human/USA/SEARCH-0155-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C10319T C14408T A23403G CGATAC25493- G25563T T27322G C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C10319T C14408T A23403G CGATAC25493- G25563T T27322G C27964T
EPI_ISL_435458 2020-04-02 29897 hCoV-19/USA/LA-SR0155/2020 United States/Louisiana/New Orleans
C1059T C3037T C10319T C14408T A23403G G25563T C27964T
MT811662 2020-03-27 29409 SARS-CoV-2/human/USA/SEARCH-0148-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C10319T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T
EPI_ISL_435451 2020-03-27 29903 hCoV-19/USA/LA-SR0148/2020 United States/Louisiana/New Orleans
MT706367 2020-03-27 29782 SARS-CoV-2/human/USA/WI-UW-239/2020 United States/Wisconsin/Ozaukee county
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-
EPI_ISL_428335 2020-03-27 29782 hCoV-19/USA/WI-UW-239/2020 United States/Wisconsin/Mequon
MT811696 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0266-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C10319T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T
EPI_ISL_445121 2020-03-31 29903 hCoV-19/USA/LA-SR0266/2020 United States/Louisiana/New Orleans
MT811758 2020-05-14 29409 SARS-CoV-2/human/USA/SEARCH-0855-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C10319T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T
EPI_ISL_483402 2020-05-14 29900 hCoV-19/USA/CA-ALSR-0855-NBG/2020 United States/Louisiana/New Orleans
C1059T C3037T C10319T C14408T C19586A C21304A C21627T A23403G G25563T C27964T
MT811719 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0289-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C10319T C14408T C19586A C21304A C21627T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C10319T C14408T C19586A C21304A C21627T A23403G G25563T C27964T
EPI_ISL_445144 2020-03-31 29903 hCoV-19/USA/LA-SR0289/2020 United States/Louisiana/New Orleans
C1059T C3037T C10319T C14408T C19586A C21627T A23403G G25563T G26209T C27654T C27964T C29025T
MT811711 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0281-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C10319T C14408T C19586A C21627T A23403G G25563T G26209T C27654T C27964T C29025T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C10319T C14408T C19586A C21627T A23403G G25563T G26209T C27654T C27964T C29025T
EPI_ISL_445136 2020-03-31 29903 hCoV-19/USA/LA-SR0281/2020 United States/Louisiana/New Orleans
C1059T C3037T C10319T C14408T C19903G A23403G G25563T C27964T
MT811724 2020-04-08 29409 SARS-CoV-2/human/USA/SEARCH-0294-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C10319T C14408T C19903G A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C10319T C14408T C19903G A23403G G25563T C27964T
EPI_ISL_445149 2020-04-08 29903 hCoV-19/USA/LA-SR0294/2020 United States/Louisiana/New Orleans
C1059T C3037T C10319T C14408T C21214T A23403G G25563T C27964T C29627T
MT811753 2020-05-14 29409 SARS-CoV-2/human/USA/SEARCH-0850-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C10319T C14408T C21214T A23403G G25563T C27964T C29627T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAA1- C241T C1059T C3037T C10319T C14408T C21214T A23403G G25563T C27964T C29627T
EPI_ISL_483398 2020-05-14 29898 hCoV-19/USA/CA-ALSR-0850-NBG/2020 United States/Louisiana/New Orleans
C1059T C3037T C10319T C14408T C23202T A23403G G25563T C27964T
MT811693 2020-04-03 29409 SARS-CoV-2/human/USA/SEARCH-0214-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C10319T C14408T C23202T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C10319T C14408T C23202T A23403G G25563T C27964T
EPI_ISL_437542 2020-04-03 29903 hCoV-19/USA/LA-SR0214/2020 United States/Louisiana/New Orleans
C1059T C3037T C10319T C14408T G15372T A23403G G25563T C27964T
MT811671 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-0157-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C10319T C14408T G15372T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C10319T C14408T G15372T A23403G G25563T C27964T
EPI_ISL_435460 2020-04-02 29903 hCoV-19/USA/LA-SR0157/2020 United States/Louisiana/New Orleans
C1059T C3037T C10319T C14408T G16622A A23403G G25563T C27964T
MT811678 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0164-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C10319T C14408T G16622A A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C10319T C14408T G16622A A23403G G25563T C27964T
EPI_ISL_435467 2020-03-31 29903 hCoV-19/USA/LA-SR0164/2020 United States/Louisiana/New Orleans
MT811751 2020-04-04 29409 SARS-CoV-2/human/USA/SEARCH-0331-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C10319T C14408T G16622A A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C10319T C14408T G16622A A23403G G25563T C27964T
EPI_ISL_450184 2020-04-04 29903 hCoV-19/USA/LA-SR0331/2020 United States/Louisiana/New Orleans
C1059T C3037T C10319T C14408T G21898A A23403G G25563T C27964T
MT811714 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-0284-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C10319T C14408T G21898A A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C10319T C14408T G21898A A23403G G25563T C27964T
EPI_ISL_445139 2020-04-01 29903 hCoV-19/USA/LA-SR0284/2020 United States/Louisiana/New Orleans
C1059T C3037T C10319T C14408T G22424T A23403G G25563T C27964T
MT811681 2020-04-03 29409 SARS-CoV-2/human/USA/SEARCH-0167-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C10319T C14408T G22424T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C10319T C14408T G22424T A23403G G25563T C27964T
EPI_ISL_435469 2020-04-03 29903 hCoV-19/USA/LA-SR0167/2020 United States/Louisiana/New Orleans
C1059T C3037T C10319T C14408T G22708T A23403G G25563T C27964T
MT811715 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-0285-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C10319T C14408T G22708T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C10319T C14408T G22708T A23403G G25563T C27964T
EPI_ISL_445140 2020-04-01 29903 hCoV-19/USA/LA-SR0285/2020 United States/Louisiana/New Orleans
C1059T C3037T C11671T C14408T A23403G G25563T
MT811314 2020-03-29 29409 SARS-CoV-2/human/USA/SEARCH-0685-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C11671T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T C11671T C14408T A23403G G25563T
EPI_ISL_483301 2020-03-29 29858 hCoV-19/USA/CA-ALSR-0685-SAN/2020 United States/California/San Diego
MT811443 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0977-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C11671T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C3037T C11671T C14408T A23403G G25563T
EPI_ISL_483436 2020-03-30 29877 hCoV-19/USA/CA-ALSR-0977-SAN/2020 United States/California/San Diego
MT811185 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-0476-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C11671T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTT1- C241T C1059T C3037T C11671T C14408T A23403G G25563T
EPI_ISL_483166 2020-04-02 29893 hCoV-19/USA/CA-ALSR-0476-SAN/2020 United States/California/San Diego
MT811451 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-0987-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C11671T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C3037T C11671T C14408T A23403G G25563T
EPI_ISL_483444 2020-04-02 29862 hCoV-19/USA/CA-ALSR-0987-SAN/2020 United States/California/San Diego
C1059T C3037T C11916T C13252T C14408T A23403G G25563T
MT811272 2020-04-06 29409 SARS-CoV-2/human/USA/SEARCH-0615-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C11916T C13252T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C11916T C13252T C14408T A23403G G25563T
EPI_ISL_483259 2020-04-06 29881 hCoV-19/USA/CA-ALSR-0615-SAN/2020 United States/California/San Diego
MT811274 2020-04-06 29409 SARS-CoV-2/human/USA/SEARCH-0617-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C11916T C13252T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTT1- C241T C1059T C3037T C11916T C13252T C14408T A23403G G25563T
EPI_ISL_483261 2020-04-06 29892 hCoV-19/USA/CA-ALSR-0617-SAN/2020 United States/California/San Diego
MT811372 2020-04-06 29409 SARS-CoV-2/human/USA/SEARCH-0790-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C11916T C13252T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C13252T C14408T A23403G G25563T
EPI_ISL_483360 2020-04-06 29888 hCoV-19/USA/CA-ALSR-0790-SAN/2020 United States/California/San Diego
C1059T C3037T C12462T C14408T A23403G C24034T G25563T C25703T C27964T
MT811672 2020-04-03 29409 SARS-CoV-2/human/USA/SEARCH-0158-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C12462T C14408T A23403G C24034T G25563T C25703T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C12462T C14408T A23403G C24034T G25563T C25703T C27964T
EPI_ISL_435461 2020-04-03 29903 hCoV-19/USA/LA-SR0158/2020 United States/Louisiana/New Orleans
C1059T C3037T C12473T C14408T A23403G G25563T C27964T
MT810507 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-1498-CS1/2020 United States/Cruise_Ship_1/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C12473T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTA1- C241T C1059T C3037T C12473T C14408T A23403G G25563T C27964T
EPI_ISL_494623 2020-04-01 29891 hCoV-19/USA/CA-ALSR-1498/2020 United States/California
MT810525 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-1658-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C12473T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAA1- C241T C1059T C3037T C12473T C14408T A23403G G25563T C27964T
EPI_ISL_494720 2020-04-01 29898 hCoV-19/USA/CA-ALSR-1658/2020 United States/California/San Diego
MT810635 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-1166-CS1/2020 United States/Cruise_Ship_1/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C12473T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C12473T C14408T A23403G G25563T C27964T
EPI_ISL_494408 2020-04-01 29864 hCoV-19/USA/CA-ALSR-1166/2020 United States/California
MT810647 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-1184-CS1/2020 United States/Cruise_Ship_1/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C12473T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C12473T C14408T A23403G G25563T C27964T
EPI_ISL_494420 2020-04-01 29854 hCoV-19/USA/CA-ALSR-1184/2020 United States/California
MT810531 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-1665-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C12473T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACC1- C241T C1059T C3037T C12473T C14408T A23403G G25563T C27964T
EPI_ISL_494726 2020-04-02 29887 hCoV-19/USA/CA-ALSR-1665/2020 United States/California/San Diego
C1059T C3037T C13011T C14408T G17014T A23403G G25217A G25563T G27621T
MT810477 2020-04-21 29409 SARS-CoV-2/human/USA/SEARCH-1360-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C13011T C14408T G17014T A23403G G25217A G25563T G27621T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C13011T C14408T G17014T A23403G G25217A G25563T G27621T
EPI_ISL_494568 2020-04-21 29865 hCoV-19/USA/CA-ALSR-1360/2020 United States/California/San Diego
C1059T C3037T C13264T C14408T T15624C A23403G G25563T C25904T C27964T C28099T T28160C
MT811734 2020-04-07 29409 SARS-CoV-2/human/USA/SEARCH-0304-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C13264T C14408T T15624C A23403G G25563T C25904T C27964T C28099T T28160C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C13264T C14408T T15624C A23403G G25563T C25904T C27964T C28099T T28160C
EPI_ISL_445159 2020-04-07 29903 hCoV-19/USA/LA-SR0304/2020 United States/Louisiana/New Orleans
C1059T C3037T C13487T C14408T C16762T A23403G G25563T C26885T A29112T
MT811330 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0709-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C13487T C14408T C16762T A23403G G25563T C26885T A29112T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C13487T C14408T C16762T A23403G G25563T C26885T A29112T
EPI_ISL_483317 2020-03-31 29864 hCoV-19/USA/CA-ALSR-0709-SAN/2020 United States/California/San Diego
MT811441 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0975-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C13487T C14408T C16762T A23403G G25563T C26885T A29112T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTT1- C241T C1059T C3037T C13487T C14408T C16762T A23403G G25563T C26885T A29112T
EPI_ISL_483434 2020-03-31 29892 hCoV-19/USA/CA-ALSR-0975-SAN/2020 United States/California/San Diego
C1059T C3037T C14408T A23403G A24952G G25563T C27964T C28826T
MT811657 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0143-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G A24952G G25563T C27964T C28826T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G A24952G G25563T C27964T C28826T
EPI_ISL_435447 2020-03-31 29903 hCoV-19/USA/LA-SR0143/2020 United States/Louisiana/New Orleans
C1059T C3037T C14408T A23403G C23638T G25563T C27964T
MT811721 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-0291-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G C23638T G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G C23638T G25563T C27964T
EPI_ISL_445146 2020-04-02 29903 hCoV-19/USA/LA-SR0291/2020 United States/Louisiana/New Orleans
C1059T C3037T C14408T A23403G C24034T G25563T C27964T
MT811682 2020-04-04 29409 SARS-CoV-2/human/USA/SEARCH-0169-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G C24034T G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G C24034T G25563T C27964T
EPI_ISL_435470 2020-04-04 29903 hCoV-19/USA/LA-SR0169/2020 United States/Louisiana/New Orleans
C1059T C3037T C14408T A23403G C24064T G25563T
MT810922 2020-03-23 29409 SARS-CoV-2/human/USA/SEARCH-0184-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G C24064T G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G C24064T G25563T
EPI_ISL_437594 2020-03-23 29903 hCoV-19/USA/CA-SR0184/2020 United States/California/San Diego
C1059T C3037T C14408T A23403G C25006T G25563T
MT811667 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-0153-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G C25006T G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G C25006T G25563T
EPI_ISL_435456 2020-04-02 29903 hCoV-19/USA/LA-SR0153/2020 United States/Louisiana/New Orleans
C1059T C3037T C14408T A23403G C25254T G25563T C27964T
MT810522 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-1653-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G C25254T G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G C25254T G25563T C27964T
EPI_ISL_494717 2020-04-01 29891 hCoV-19/USA/CA-ALSR-1653/2020 United States/California/San Diego
C1059T C3037T C14408T A23403G G25563T
MT810561 2020-03-11 29409 SARS-CoV-2/human/USA/SEARCH-0429-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G G25563T
EPI_ISL_467959 2020-03-11 29903 hCoV-19/USA/CA-SR0429/2020 United States/California/San Diego
MT811166 2020-03-14 29409 SARS-CoV-2/human/USA/SEARCH-0099-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G G25563T
EPI_ISL_445098 2020-03-14 29903 hCoV-19/USA/CA-SR0099/2020 United States/California/San Diego
MT810539 2020-03-20 29409 SARS-CoV-2/human/USA/SEARCH-1674-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
AT1- C241T C1059T C3037T C14408T A23403G G25563T
EPI_ISL_494734 2020-03-20 29901 hCoV-19/USA/CA-ALSR-1674/2020 United States/California/San Diego
MT810837 2020-03-20 29409 SARS-CoV-2/human/USA/SEARCH-1463-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T
EPI_ISL_494619 2020-03-20 29863 hCoV-19/USA/CA-ALSR-1463/2020 United States/California/San Diego
MT810540 2020-03-24 29409 SARS-CoV-2/human/USA/SEARCH-1675-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T
EPI_ISL_494735 2020-03-24 29864 hCoV-19/USA/CA-ALSR-1675/2020 United States/California/San Diego
MT810559 2020-03-24 29409 SARS-CoV-2/human/USA/SEARCH-0426-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G G25563T
EPI_ISL_467957 2020-03-24 29903 hCoV-19/USA/CA-SR0426/2020 United States/California/San Diego
MT810953 2020-03-24 29409 SARS-CoV-2/human/USA/SEARCH-0245-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G G25563T
EPI_ISL_437564 2020-03-24 29903 hCoV-19/USA/CA-SR0245/2020 United States/California/San Diego
MT810829 2020-03-25 29409 SARS-CoV-2/human/USA/SEARCH-1451-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T
EPI_ISL_494611 2020-03-25 29896 hCoV-19/USA/CA-ALSR-1451/2020 United States/California/San Diego
MT811019 2020-03-25 29409 SARS-CoV-2/human/USA/SEARCH-0413-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G G25563T
EPI_ISL_458283 2020-03-25 29903 hCoV-19/USA/CA-SR0413/2020 United States/California/San Diego
MT811173 2020-03-25 29409 SARS-CoV-2/human/USA/SEARCH-0115-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G G25563T
EPI_ISL_445107 2020-03-25 29903 hCoV-19/USA/CA-SR0115/2020 United States/California/San Diego
MT810784 2020-03-26 29409 SARS-CoV-2/human/MEX/SEARCH-1710-TIJ/2020 Mexico/Tijuana/BajaCalifornia
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
A1- C241T C1059T C3037T C14408T A23403G G25563T
EPI_ISL_496371 2020-03-26 29902 hCoV-19/Mexico/ALSR-1710/2020 Mexico/Baja California/Tijuana
MT811335 2020-03-27 29409 SARS-CoV-2/human/USA/SEARCH-0719-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1059T C3037T C14408T A23403G G25563T
EPI_ISL_483322 2020-03-27 29861 hCoV-19/USA/CA-ALSR-0719-SAN/2020 United States/California/San Diego
MT811180 2020-03-28 29409 SARS-CoV-2/human/USA/SEARCH-0130-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G G25563T
EPI_ISL_445114 2020-03-28 29903 hCoV-19/USA/CA-SR0130/2020 United States/California/San Diego
MT811315 2020-03-29 29409 SARS-CoV-2/human/USA/SEARCH-0686-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T
EPI_ISL_483302 2020-03-29 29854 hCoV-19/USA/CA-ALSR-0686-SAN/2020 United States/California/San Diego
MT811380 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0801-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C1059T C3037T C14408T A23403G G25563T
EPI_ISL_483368 2020-03-31 29899 hCoV-19/USA/CA-ALSR-0801-SAN/2020 United States/California/San Diego
MT811188 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-0481-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T
EPI_ISL_483169 2020-04-02 29864 hCoV-19/USA/CA-ALSR-0481-SAN/2020 United States/California/San Diego
MT811393 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-0821-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGG1- C241T C1059T C3037T C14408T A23403G G25563T
EPI_ISL_483381 2020-04-02 29895 hCoV-19/USA/CA-ALSR-0821-SAN/2020 United States/California/San Diego
MT811395 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-0827-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T
EPI_ISL_483384 2020-04-02 29854 hCoV-19/USA/CA-ALSR-0827-SAN/2020 United States/California/San Diego
MT810989 2020-04-05 29409 SARS-CoV-2/human/USA/SEARCH-0369-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G G25563T
EPI_ISL_458252 2020-04-05 29903 hCoV-19/USA/CA-SR0369/2020 United States/California/San Diego
MT811017 2020-04-05 29409 SARS-CoV-2/human/USA/SEARCH-0411-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G G25563T
EPI_ISL_458281 2020-04-05 29903 hCoV-19/USA/CA-SR0411/2020 United States/California/San Diego
MT810672 2020-04-21 29409 SARS-CoV-2/human/USA/SEARCH-1220-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T
EPI_ISL_494445 2020-04-21 29864 hCoV-19/USA/CA-ALSR-1220/2020 United States/California/San Diego
MT810990 2020-04-29 29409 SARS-CoV-2/human/USA/SEARCH-0370-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G G25563T
EPI_ISL_458253 2020-04-29 29903 hCoV-19/USA/CA-SR0370/2020 United States/California/San Diego
C1059T C3037T C14408T A23403G G25563T C27964T
EPI_ISL_434527 2020-03-26 SARS-CoV-2/human/USA/SEARCH-0071-NBG/2020 United States/Louisiana/New Orleans
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-
EPI_ISL_455989 2020-03-26 29840 hCoV-19/USA/LA-EVTL146/2020 United States/Louisiana
MT811675 2020-03-28 29409 SARS-CoV-2/human/USA/SEARCH-0161-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G G25563T C27964T
EPI_ISL_435464 2020-03-28 29903 hCoV-19/USA/LA-SR0161/2020 United States/Louisiana/New Orleans
MT811320 2020-03-29 29409 SARS-CoV-2/human/USA/SEARCH-0696-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
AT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T
EPI_ISL_483307 2020-03-29 29901 hCoV-19/USA/CA-ALSR-0696-SAN/2020 United States/California/San Diego
MT811654 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0140-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G G25563T C27964T
EPI_ISL_435445 2020-03-31 29903 hCoV-19/USA/LA-SR0140/2020 United States/Louisiana/New Orleans
MT811676 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0162-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G G25563T C27964T
EPI_ISL_435465 2020-03-31 29903 hCoV-19/USA/LA-SR0162/2020 United States/Louisiana/New Orleans
MT811702 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-0272-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G G25563T C27964T
EPI_ISL_445127 2020-04-01 29903 hCoV-19/USA/LA-SR0272/2020 United States/Louisiana/New Orleans
MT810527 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-1661-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G G25563T C27964T
EPI_ISL_494722 2020-04-02 29903 hCoV-19/USA/CA-ALSR-1661/2020 United States/California/San Diego
MT810536 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-1671-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C1059T C3037T C14408T A23403G G25563T C27964T
EPI_ISL_494731 2020-04-02 29857 hCoV-19/USA/CA-ALSR-1671/2020 United States/California/San Diego
MT811673 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-0159-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G G25563T C27964T
EPI_ISL_435462 2020-04-02 29903 hCoV-19/USA/LA-SR0159/2020 United States/Louisiana/New Orleans
MT811748 2020-04-04 29409 SARS-CoV-2/human/USA/SEARCH-0328-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G G25563T C27964T
EPI_ISL_450181 2020-04-04 29903 hCoV-19/USA/LA-SR0328/2020 United States/Louisiana/New Orleans
MT811745 2020-04-05 29409 SARS-CoV-2/human/USA/SEARCH-0324-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G G25563T C27964T
EPI_ISL_450178 2020-04-05 29903 hCoV-19/USA/LA-SR0324/2020 United States/Louisiana/New Orleans
C1059T C3037T C14408T A23403G G25563T C27964T T29128C
MT811701 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0271-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T T29128C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G G25563T C27964T T29128C
EPI_ISL_445126 2020-03-31 29903 hCoV-19/USA/LA-SR0271/2020 United States/Louisiana/New Orleans
C1059T C3037T C14408T A23403G G25563T C28253T
MT811255 2020-04-15 29409 SARS-CoV-2/human/USA/SEARCH-0583-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C28253T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C1059T C3037T C14408T A23403G G25563T C28253T
EPI_ISL_483239 2020-04-15 29899 hCoV-19/USA/CA-ALSR-0583-SAN/2020 United States/California/San Diego
MT811468 2020-04-17 29409 SARS-CoV-2/human/USA/SEARCH-1013-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C28253T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C28253T
EPI_ISL_483461 2020-04-17 29865 hCoV-19/USA/CA-ALSR-1013-SAN/2020 United States/California/San Diego
C1059T C3037T C14408T A23403G G25563T C29253T
MT811169 2020-03-15 29409 SARS-CoV-2/human/USA/SEARCH-0104-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C29253T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T A23403G G25563T C29253T
EPI_ISL_445101 2020-03-15 29903 hCoV-19/USA/CA-SR0104/2020 United States/California/San Diego
C1059T C3037T C14408T A23403G G25563T G29553A
MT811329 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0707-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T G29553A CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A
EPI_ISL_483316 2020-03-30 29865 hCoV-19/USA/CA-ALSR-0707-SAN/2020 United States/California/San Diego
C1059T C3037T C14408T A23403G G25563T T26320C C27964T
MT811741 2020-04-04 29409 SARS-CoV-2/human/USA/SEARCH-0319-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T T26320C C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
T10G C241T C1059T C3037T C14408T A23403G G25563T T26320C C27964T
EPI_ISL_450174 2020-04-04 29903 hCoV-19/USA/LA-SR0319/2020 United States/Louisiana/New Orleans
C1059T C3037T C14408T C14818T C16762T A23403G G25563T
MT810723 2020-04-29 29409 SARS-CoV-2/human/USA/SEARCH-1329-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C14818T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGG1- C241T C1059T C3037T C14408T C14818T C16762T A23403G G25563T
EPI_ISL_494495 2020-04-29 29895 hCoV-19/USA/CA-ALSR-1329/2020 United States/California/San Diego
MT810724 2020-04-29 29409 SARS-CoV-2/human/USA/SEARCH-1332-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C14818T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGT1- C241T C1059T C3037T C14408T C14818T C16762T A23403G G25563T
EPI_ISL_494496 2020-04-29 29894 hCoV-19/USA/CA-ALSR-1332/2020 United States/California/San Diego
C1059T C3037T C14408T C14818T C16762T C18264T A23403G G25563T
MT810478 2020-04-21 29409 SARS-CoV-2/human/USA/SEARCH-1362-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C14818T C16762T C18264T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T C14818T C16762T C18264T A23403G G25563T
EPI_ISL_494569 2020-04-21 29864 hCoV-19/USA/CA-ALSR-1362/2020 United States/California/San Diego
C1059T C3037T C14408T C15842T C16762T A23403G G25563T
MT811386 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0810-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C15842T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C15842T C16762T A23403G G25563T
EPI_ISL_483374 2020-03-30 29849 hCoV-19/USA/CA-ALSR-0810-SAN/2020 United States/California/San Diego
C1059T C3037T C14408T C16193T A23403G C25499T G25563T
MT810504 2020-04-21 29409 SARS-CoV-2/human/USA/SEARCH-1491-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C16193T A23403G C25499T G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T C16193T A23403G C25499T G25563T
EPI_ISL_494620 2020-04-21 29856 hCoV-19/USA/CA-ALSR-1491/2020 United States/California/San Diego
C1059T C3037T C14408T C16260T C16575T C20032T G22484T A23403G G25563T C27371T C28821A
MT811509 2020-06-22 29409 SARS-CoV-2/human/USA/SEARCH-1077-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C16260T C16575T C20032T G22484T A23403G G25563T C27371T C28821A CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
AT1- A34T C241T C1059T C3037T C14408T C16260T C16575T C20032T G22484T A23403G G25563T C27371T C28821A
EPI_ISL_483504 2020-06-22 29901 hCoV-19/USA/CA-ALSR-1077-SAN/2020 United States/California/San Diego
C1059T C3037T C14408T C16762T A23403G G25563T
MT810969 2020-03-21 29409 SARS-CoV-2/human/USA/SEARCH-0310-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T C16762T A23403G G25563T
EPI_ISL_445164 2020-03-21 29903 hCoV-19/USA/CA-SR0310/2020 United States/California/San Diego
MT810835 2020-03-23 29409 SARS-CoV-2/human/USA/SEARCH-1461-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T C16762T A23403G G25563T
EPI_ISL_494617 2020-03-23 29854 hCoV-19/USA/CA-ALSR-1461/2020 United States/California/San Diego
MT810973 2020-03-23 29409 SARS-CoV-2/human/USA/SEARCH-0347-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T C16762T A23403G G25563T
EPI_ISL_450191 2020-03-23 29903 hCoV-19/USA/CA-SR0347/2020 United States/California/San Diego
MT810537 2020-03-24 29409 SARS-CoV-2/human/USA/SEARCH-1672-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C16762T A23403G G25563T
EPI_ISL_494732 2020-03-24 29865 hCoV-19/USA/CA-ALSR-1672/2020 United States/California/San Diego
MT810830 2020-03-27 29409 SARS-CoV-2/human/USA/SEARCH-1452-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
A1- C241T C1059T C3037T C14408T C16762T A23403G G25563T
EPI_ISL_494612 2020-03-27 29902 hCoV-19/USA/CA-ALSR-1452/2020 United States/California/San Diego
MT810824 2020-03-28 29409 SARS-CoV-2/human/USA/SEARCH-1444-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C14408T C16762T A23403G G25563T CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTG29730-
EPI_ISL_494606 2020-03-28 29838 hCoV-19/USA/CA-ALSR-1444/2020 United States/California/San Diego
MT810825 2020-03-28 29409 SARS-CoV-2/human/USA/SEARCH-1446-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T C16762T A23403G G25563T
EPI_ISL_494607 2020-03-28 29886 hCoV-19/USA/CA-ALSR-1446/2020 United States/California/San Diego
MT811312 2020-03-28 29409 SARS-CoV-2/human/USA/SEARCH-0682-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAG1- C241T C1059T C3037T C14408T C16762T A23403G G25563T CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTG29730-
EPI_ISL_483299 2020-03-28 29859 hCoV-19/USA/CA-ALSR-0682-SAN/2020 United States/California/San Diego
MT811433 2020-03-29 29409 SARS-CoV-2/human/USA/SEARCH-0941-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T C16762T A23403G G25563T
EPI_ISL_483426 2020-03-29 29887 hCoV-19/USA/CA-ALSR-0941-SAN/2020 United States/California/San Diego
MT811218 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0524-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C16762T A23403G G25563T
EPI_ISL_483201 2020-03-30 29865 hCoV-19/USA/CA-ALSR-0524-SAN/2020 United States/California/San Diego
MT811383 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0805-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATA1- C241T C1059T C3037T C14408T C16762T A23403G G25563T
EPI_ISL_483371 2020-03-30 29889 hCoV-19/USA/CA-ALSR-0805-SAN/2020 United States/California/San Diego
MT811186 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0477-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T C16762T A23403G G25563T
EPI_ISL_483167 2020-03-31 29864 hCoV-19/USA/CA-ALSR-0477-SAN/2020 United States/California/San Diego
MT811399 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0832-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16762T A23403G G25563T
EPI_ISL_483388 2020-03-31 29849 hCoV-19/USA/CA-ALSR-0832-SAN/2020 United States/California/San Diego
MT811403 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0837-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C16762T A23403G G25563T
EPI_ISL_483392 2020-03-31 29865 hCoV-19/USA/CA-ALSR-0837-SAN/2020 United States/California/San Diego
C1059T C3037T C14408T C16762T A23403G G25563T C26885T
MT810563 2020-03-19 29409 SARS-CoV-2/human/USA/SEARCH-0431-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T C26885T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T C16762T A23403G G25563T C26885T
EPI_ISL_467961 2020-03-19 29903 hCoV-19/USA/CA-SR0431/2020 United States/California/San Diego
C1059T C3037T C14408T C16762T A23403G G25563T G25660T
MT811369 2020-04-07 29409 SARS-CoV-2/human/USA/SEARCH-0787-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T G25660T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T C16762T A23403G G25563T G25660T
EPI_ISL_483357 2020-04-07 29903 hCoV-19/USA/CA-ALSR-0787-SAN/2020 United States/California/San Diego
MT810995 2020-04-13 29409 SARS-CoV-2/human/USA/SEARCH-0376-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T G25660T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T C16762T A23403G G25563T G25660T
EPI_ISL_458258 2020-04-13 29903 hCoV-19/USA/CA-SR0376/2020 United States/California/San Diego
MT811021 2020-04-14 29409 SARS-CoV-2/human/USA/SEARCH-0434-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T G25660T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T C16762T A23403G G25563T G25660T
EPI_ISL_467963 2020-04-14 29903 hCoV-19/USA/CA-SR0434/2020 United States/California/San Diego
C1059T C3037T C14408T C16762T A23403G G25563T G29527T
MT811201 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-0499-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T G29527T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T C16762T A23403G G25563T G29527T
EPI_ISL_483183 2020-04-01 29903 hCoV-19/USA/CA-ALSR-0499-SAN/2020 United States/California/San Diego
C1059T C3037T C14408T C16762T A23403G G25563T T27504A
MT811354 2020-04-11 29409 SARS-CoV-2/human/USA/SEARCH-0762-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T T27504A CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T C16762T A23403G G25563T T27504A
EPI_ISL_483341 2020-04-11 29854 hCoV-19/USA/CA-ALSR-0762-SAN/2020 United States/California/San Diego
MT811355 2020-04-11 29409 SARS-CoV-2/human/USA/SEARCH-0763-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T T27504A CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C16762T A23403G G25563T T27504A
EPI_ISL_483342 2020-04-11 29865 hCoV-19/USA/CA-ALSR-0763-IPL/2020 United States/California/Imperial
MT811258 2020-04-13 29409 SARS-CoV-2/human/USA/SEARCH-0587-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T T27504A CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T C16762T A23403G G25563T T27504A
EPI_ISL_483243 2020-04-13 29854 hCoV-19/USA/CA-ALSR-0587-SAN/2020 United States/California/San Diego
C1059T C3037T C14408T C18115T C18377T A23403G A25182C G25563T
MT811208 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0508-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C18115T C18377T A23403G A25182C G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T C18115T C18377T A23403G A25182C G25563T
EPI_ISL_483190 2020-03-31 29903 hCoV-19/USA/CA-ALSR-0508-SAN/2020 United States/California/San Diego
MT811398 2020-04-06 29409 SARS-CoV-2/human/USA/SEARCH-0831-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C18115T C18377T A23403G A25182C G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C1059T C3037T C14408T C18115T C18377T A23403G A25182C G25563T
EPI_ISL_483387 2020-04-06 29874 hCoV-19/USA/CA-ALSR-0831-IPL/2020 United States/California/Imperial
C1059T C3037T C14408T C18115T C21254T A23403G G25563T C27964T
MT811700 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-0270-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C18115T C21254T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T C18115T C21254T A23403G G25563T C27964T
EPI_ISL_445125 2020-04-01 29903 hCoV-19/USA/LA-SR0270/2020 United States/Louisiana/New Orleans
C1059T C3037T C14408T C19955G A23403G G25563T C27964T
MT811752 2020-04-04 29409 SARS-CoV-2/human/USA/SEARCH-0332-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C19955G A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T C19955G A23403G G25563T C27964T
EPI_ISL_450185 2020-04-04 29903 hCoV-19/USA/LA-SR0332/2020 United States/Louisiana/New Orleans
C1059T C3037T C14408T C21629A A23403G G25563T C27964T C29347T
MT811706 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0276-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T C21629A A23403G G25563T C27964T C29347T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T C21629A A23403G G25563T C27964T C29347T ATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATT29684-
EPI_ISL_445131 2020-03-31 29859 hCoV-19/USA/LA-SR0276/2020 United States/Louisiana/New Orleans
C1059T C3037T C14408T G16622A A23403G G25563T C27964T
MT811664 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0150-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T G16622A A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C40T C241T C1059T C3037T C14408T G16622A A23403G G25563T C27964T
EPI_ISL_435453 2020-03-30 29903 hCoV-19/USA/LA-SR0150/2020 United States/Louisiana/New Orleans
C1059T C3037T C14408T G17014T A23403G G24608T G25563T
MT810510 2020-04-20 29409 SARS-CoV-2/human/USA/SEARCH-1503-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G24608T G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTT1- C241T C1059T C3037T C14408T G17014T A23403G G24608T G25563T
EPI_ISL_494626 2020-04-20 29893 hCoV-19/USA/CA-ALSR-1503/2020 United States/California/San Diego
C1059T C3037T C14408T G17014T A23403G G25563T
MT811385 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0809-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGT1- C241T C1059T C3037T C14408T G17014T A23403G G25563T
EPI_ISL_483373 2020-03-30 29894 hCoV-19/USA/CA-ALSR-0809-SAN/2020 United States/California/San Diego
MT811387 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0812-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T G17014T A23403G G25563T
EPI_ISL_483375 2020-03-30 29856 hCoV-19/USA/CA-ALSR-0812-SAN/2020 United States/California/San Diego
MT810949 2020-04-20 29409 SARS-CoV-2/human/USA/SEARCH-0235-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T G17014T A23403G G25563T
EPI_ISL_437569 2020-04-20 29903 hCoV-19/USA/CA-SR0235/2020 United States/California/San Diego
C1059T C3037T C14408T G17014T A23403G G25563T A25822T
MT811495 2020-06-20 29409 SARS-CoV-2/human/USA/SEARCH-1059-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T A25822T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C1059T C3037T C14408T G17014T A23403G G25563T A25822T
EPI_ISL_483490 2020-06-20 29899 hCoV-19/USA/CA-ALSR-1059-SAN/2020 United States/California/San Diego
C1059T C3037T C14408T G17014T A23403G G25563T C27494T
MT810781 2020-04-21 29409 SARS-CoV-2/human/MEX/SEARCH-1707-TIJ/2020 Mexico/Tijuana/BajaCalifornia
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T C27494T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1059T C3037T C14408T G17014T A23403G G25563T C27494T
EPI_ISL_496368 2020-04-21 29861 hCoV-19/Mexico/ALSR-1707/2020 Mexico/Baja California/Tijuana
C1059T C3037T C14408T G17014T A23403G G25563T G28881T
MT810855 2020-05-04 29409 SARS-CoV-2/human/USA/SEARCH-1545-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T G28881T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T G17014T A23403G G25563T G28881T
EPI_ISL_494654 2020-05-04 29864 hCoV-19/USA/CA-ALSR-1545/2020 United States/California/San Diego
C1059T C3037T C14408T G17014T C18457T A23403G G25552A G25563T
MT811250 2020-05-13 29409 SARS-CoV-2/human/USA/SEARCH-0578-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T G17014T C18457T A23403G G25552A G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T G17014T C18457T A23403G G25552A G25563T
EPI_ISL_483234 2020-05-13 29854 hCoV-19/USA/CA-ALSR-0578-SAN/2020 United States/California/San Diego
C1059T C3037T C14408T T18513C T22054C A23403G G25563T C27964T
MT811658 2020-03-27 29409 SARS-CoV-2/human/USA/SEARCH-0144-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T T18513C T22054C A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
T9A C241T C1059T C3037T C14408T T18513C T22054C A23403G G25563T C27964T
EPI_ISL_435448 2020-03-27 29903 hCoV-19/USA/LA-SR0144/2020 United States/Louisiana/New Orleans
MT811689 2020-03-27 29409 SARS-CoV-2/human/USA/SEARCH-0209-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T T18513C T22054C A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T T18513C T22054C A23403G G25563T C27964T
EPI_ISL_437546 2020-03-27 29903 hCoV-19/USA/LA-SR0209/2020 United States/Louisiana/New Orleans
C1059T C3037T C14408T T19791C A23403G G25563T
MT810538 2020-03-19 29409 SARS-CoV-2/human/USA/SEARCH-1673-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T T19791C A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAG1- C241T C1059T C3037T C14408T T19791C A23403G G25563T
EPI_ISL_494733 2020-03-19 29896 hCoV-19/USA/CA-ALSR-1673/2020 United States/California/San Diego
C1059T C3037T C14408T T21968C A23403G G25563T C25886T C27964T T29302C
MT811716 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0286-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C14408T T21968C A23403G G25563T C25886T C27964T T29302C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C14408T T21968C A23403G G25563T C25886T C27964T T29302C
EPI_ISL_445141 2020-03-31 29903 hCoV-19/USA/LA-SR0286/2020 United States/Louisiana/New Orleans
C1059T C3037T C3365T C14408T A23403G C25386T G25563T G25757A
MT810827 2020-03-26 29409 SARS-CoV-2/human/USA/SEARCH-1448-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C3365T C14408T A23403G C25386T G25563T G25757A CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATT1- C241T C1059T C3037T C3365T C14408T A23403G C25386T G25563T G25757A
EPI_ISL_494609 2020-03-26 29900 hCoV-19/USA/CA-ALSR-1448/2020 United States/California/San Diego
MT811177 2020-03-26 29409 SARS-CoV-2/human/USA/SEARCH-0120-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C3365T C14408T A23403G C25386T G25563T G25757A CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C3365T C14408T A23403G C25386T G25563T G25757A
EPI_ISL_445111 2020-03-26 29903 hCoV-19/USA/CA-SR0120/2020 United States/California/San Diego
C1059T C3037T C3738T C10319T C14408T A23403G G25563T C27964T G29543T
MT811680 2020-04-03 29409 SARS-CoV-2/human/USA/SEARCH-0166-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C3738T C10319T C14408T A23403G G25563T C27964T G29543T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C3738T C10319T C14408T A23403G G25563T C27964T G29543T
EPI_ISL_435468 2020-04-03 29903 hCoV-19/USA/LA-SR0166/2020 United States/Louisiana/New Orleans
C1059T C3037T C3787T C14408T A23403G G25563T C27964T C28708T
MT811729 2020-04-07 29409 SARS-CoV-2/human/USA/SEARCH-0299-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C3787T C14408T A23403G G25563T C27964T C28708T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C3787T C14408T A23403G G25563T C27964T C28708T
EPI_ISL_445154 2020-04-07 29903 hCoV-19/USA/LA-SR0299/2020 United States/Louisiana/New Orleans
C1059T C3037T C4940T C10188T C14408T A23403G T24982C G25563T C27964T
MT811731 2020-04-08 29409 SARS-CoV-2/human/USA/SEARCH-0301-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C4940T C10188T C14408T A23403G T24982C G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C4940T C10188T C14408T A23403G T24982C G25563T C27964T
EPI_ISL_445156 2020-04-08 29903 hCoV-19/USA/LA-SR0301/2020 United States/Louisiana/New Orleans
C1059T C3037T C5812T C14408T A23403G G25563T
MT811282 2020-04-23 29409 SARS-CoV-2/human/USA/SEARCH-0630-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C5812T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C5812T C14408T A23403G G25563T
EPI_ISL_483269 2020-04-23 29864 hCoV-19/USA/CA-ALSR-0630-IPL/2020 United States/California/Imperial
C1059T C3037T C5869T C14408T A23403G G25563T C27964T
MT811740 2020-04-04 29409 SARS-CoV-2/human/USA/SEARCH-0318-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C5869T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C5869T C14408T A23403G G25563T C27964T
EPI_ISL_450173 2020-04-04 29903 hCoV-19/USA/LA-SR0318/2020 United States/Louisiana/New Orleans
MT811725 2020-04-08 29409 SARS-CoV-2/human/USA/SEARCH-0295-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C5869T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
G8A C241T C1059T C3037T C5869T C14408T A23403G G25563T C27964T
EPI_ISL_445150 2020-04-08 29903 hCoV-19/USA/LA-SR0295/2020 United States/Louisiana/New Orleans
C1059T C3037T C6255T C14408T A23403G G23426T G25563T
MT810916 2020-03-20 29409 SARS-CoV-2/human/USA/SEARCH-0178-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C6255T C14408T A23403G G23426T G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C6255T C14408T A23403G G23426T G25563T
EPI_ISL_437599 2020-03-20 29903 hCoV-19/USA/CA-SR0178/2020 United States/California/San Diego
C1059T C3037T C6285T C14408T A23403G G25563T C27964T
MT811697 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0267-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C6285T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C6285T C14408T A23403G G25563T C27964T
EPI_ISL_445122 2020-03-31 29903 hCoV-19/USA/LA-SR0267/2020 United States/Louisiana/New Orleans
C1059T C3037T C6629T C14408T C23277T A23403G G25563T
MT811181 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0132-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C6629T C14408T C23277T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C6629T C14408T C23277T A23403G G25563T
EPI_ISL_445115 2020-03-30 29903 hCoV-19/USA/CA-SR0132/2020 United States/California/San Diego
MT811331 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0711-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C6629T C14408T C23277T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C6629T C14408T C23277T A23403G G25563T
EPI_ISL_483318 2020-03-30 29903 hCoV-19/USA/CA-ALSR-0711-SAN/2020 United States/California/San Diego
MT811394 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0823-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C6629T C14408T C23277T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C1059T C3037T C6629T C14408T C23277T A23403G G25563T
EPI_ISL_483383 2020-03-30 29899 hCoV-19/USA/CA-ALSR-0823-SAN/2020 United States/California/San Diego
MT811207 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0506-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C6629T C14408T C23277T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTT1- C241T C1059T C3037T C6629T C14408T C23277T A23403G G25563T
EPI_ISL_483189 2020-03-31 29892 hCoV-19/USA/CA-ALSR-0506-SAN/2020 United States/California/San Diego
MT811454 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0991-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C6629T C14408T C23277T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C1059T C3037T C6629T C14408T C23277T A23403G G25563T
EPI_ISL_483447 2020-03-31 29899 hCoV-19/USA/CA-ALSR-0991-SAN/2020 United States/California/San Diego
C1059T C3037T C6629T T14145C C14408T C23277T A23403G G25563T
MT810979 2020-04-09 29409 SARS-CoV-2/human/USA/SEARCH-0356-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C6629T T14145C C14408T C23277T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C6629T T14145C C14408T C23277T A23403G G25563T
EPI_ISL_458241 2020-04-09 29903 hCoV-19/USA/CA-SR0356/2020 United States/California/San Diego
C1059T C3037T C7732T C14408T G19101T A23403G G25563T
MT811366 2020-04-06 29409 SARS-CoV-2/human/USA/SEARCH-0782-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C7732T C14408T G19101T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C1059T C3037T C7732T C14408T G19101T A23403G G25563T
EPI_ISL_483354 2020-04-06 29899 hCoV-19/USA/CA-ALSR-0782-SAN/2020 United States/California/San Diego
C1059T C3037T C7932T C12473T C14408T A23403G G25563T C27964T
MT810547 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-1684-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C7932T C12473T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C7932T C12473T C14408T A23403G G25563T C27964T
EPI_ISL_494742 2020-04-01 29864 hCoV-19/USA/CA-ALSR-1684/2020 United States/California/San Diego
MT810529 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-1663-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C7932T C12473T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C7932T C12473T C14408T A23403G G25563T C27964T
EPI_ISL_494724 2020-04-02 29903 hCoV-19/USA/CA-ALSR-1663/2020 United States/California/San Diego
C1059T C3037T C7945T CC14407TT C17850T A23403G G25563T
MT811171 2020-03-24 29409 SARS-CoV-2/human/USA/SEARCH-0111-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C7945T CC14407TT C17850T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C7945T CC14407TT C17850T A23403G G25563T
EPI_ISL_445105 2020-03-24 29903 hCoV-19/USA/CA-SR0111/2020 United States/California/San Diego
C1059T C3037T C8841T C14408T C20703T A23403G G25563T C27964T
MT811728 2020-04-08 29409 SARS-CoV-2/human/USA/SEARCH-0298-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C8841T C14408T C20703T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C8841T C14408T C20703T A23403G G25563T C27964T
EPI_ISL_445153 2020-04-08 29903 hCoV-19/USA/LA-SR0298/2020 United States/Louisiana/New Orleans
C1059T C3037T C9246T C10188T C14408T A23403G T24982C G25563T C27964T
MT811743 2020-04-06 29409 SARS-CoV-2/human/USA/SEARCH-0322-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C9246T C10188T C14408T A23403G T24982C G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C9246T C10188T C14408T A23403G T24982C G25563T C27964T
EPI_ISL_450176 2020-04-06 29903 hCoV-19/USA/LA-SR0322/2020 United States/Louisiana/New Orleans
MT811747 2020-04-08 29409 SARS-CoV-2/human/USA/SEARCH-0327-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C9246T C10188T C14408T A23403G T24982C G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C9246T C10188T C14408T A23403G T24982C G25563T C27964T
EPI_ISL_450180 2020-04-08 29903 hCoV-19/USA/LA-SR0327/2020 United States/Louisiana/New Orleans
C1059T C3037T C9603T C10319T C11344T C14408T A23403G G25563T C27964T
MT811737 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-0307-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C9603T C10319T C11344T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T C9603T C10319T C11344T C14408T A23403G G25563T C27964T
EPI_ISL_445162 2020-04-02 29903 hCoV-19/USA/LA-SR0307/2020 United States/Louisiana/New Orleans
C1059T C3037T C9891T C14408T C16762T A23403G G25563T
MT810814 2020-03-28 29409 SARS-CoV-2/human/USA/SEARCH-1428-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C9891T C14408T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGT1- C241T C1059T C3037T C9891T C14408T C16762T A23403G G25563T
EPI_ISL_494596 2020-03-28 29894 hCoV-19/USA/CA-ALSR-1428/2020 United States/California/San Diego
MT810815 2020-03-28 29409 SARS-CoV-2/human/USA/SEARCH-1430-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T C9891T C14408T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1059T C3037T C9891T C14408T C16762T A23403G G25563T
EPI_ISL_494597 2020-03-28 29861 hCoV-19/USA/CA-ALSR-1430/2020 United States/California/San Diego
C1059T C3037T G10533A C14408T C16289T C16762T A23403G G25563T C29460A
MT810952 2020-03-24 29409 SARS-CoV-2/human/USA/SEARCH-0240-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T G10533A C14408T C16289T C16762T A23403G G25563T C29460A CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T G10533A C14408T C16289T C16762T A23403G G25563T C29460A
EPI_ISL_437566 2020-03-24 29903 hCoV-19/USA/CA-SR0240/2020 United States/California/San Diego
C1059T C3037T G11138T C14408T C16762T A23403G G25563T
MT810523 2020-03-24 29409 SARS-CoV-2/human/USA/SEARCH-1654-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T G11138T C14408T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C1059T C3037T G11138T C14408T C16762T A23403G G25563T
EPI_ISL_494718 2020-03-24 29899 hCoV-19/USA/CA-ALSR-1654/2020 United States/California/San Diego
C1059T C3037T G12817T C14408T C14818T C16762T A23403G G25563T C27513T
MT810725 2020-04-30 29409 SARS-CoV-2/human/USA/SEARCH-1333-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T G12817T C14408T C14818T C16762T A23403G G25563T C27513T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATAC1- C241T C1059T C3037T G12817T C14408T C14818T C16762T A23403G G25563T C27513T
EPI_ISL_494497 2020-04-30 29888 hCoV-19/USA/CA-ALSR-1333/2020 United States/California/San Diego
C1059T C3037T G12988T C14408T C21302T A23403G G25563T C27964T
MT811699 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-0269-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T G12988T C14408T C21302T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T G12988T C14408T C21302T A23403G G25563T C27964T
EPI_ISL_445124 2020-04-02 29903 hCoV-19/USA/LA-SR0269/2020 United States/Louisiana/New Orleans
C1059T C3037T G13082T C14408T A23403G G25563T C27964T
MT811655 2020-03-28 29409 SARS-CoV-2/human/USA/SEARCH-0141-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T G13082T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T G13082T C14408T A23403G G25563T C27964T
EPI_ISL_435446 2020-03-28 29903 hCoV-19/USA/LA-SR0141/2020 United States/Louisiana/New Orleans
C1059T C3037T G3340T C12473T C14408T C19402T A23403G G25563T C26028T C27964T
MT810627 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-1157-CS1/2020 United States/Cruise_Ship_1/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T G3340T C12473T C14408T C19402T A23403G G25563T C26028T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T G3340T C12473T C14408T C19402T A23403G G25563T C26028T C27964T
EPI_ISL_494400 2020-04-01 29856 hCoV-19/USA/CA-ALSR-1157/2020 United States/California
C1059T C3037T G3871T C6384T C10188T C14408T G22244C A23403G T24982C G25563T A25864G C27964T
MT811727 2020-04-08 29409 SARS-CoV-2/human/USA/SEARCH-0297-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T G3871T C6384T C10188T C14408T G22244C A23403G T24982C G25563T A25864G C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T G3871T C6384T C10188T C14408T G22244C A23403G T24982C G25563T A25864G C27964T
EPI_ISL_445152 2020-04-08 29903 hCoV-19/USA/LA-SR0297/2020 United States/Louisiana/New Orleans
C1059T C3037T G3892T C14408T A23403G G25563T
MT810972 2020-03-27 29409 SARS-CoV-2/human/USA/SEARCH-0313-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T G3892T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T G3892T C14408T A23403G G25563T
EPI_ISL_445167 2020-03-27 29903 hCoV-19/USA/CA-SR0313/2020 United States/California/San Diego
MT811378 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-0799-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T G3892T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C32T C241T C1059T C3037T G3892T C14408T A23403G G25563T
EPI_ISL_483366 2020-04-02 29903 hCoV-19/USA/CA-ALSR-0799-SAN/2020 United States/California/San Diego
C1059T C3037T G4504A C14408T A23403G G25563T
MT811190 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0483-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T G4504A C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T G4504A C14408T A23403G G25563T
EPI_ISL_483171 2020-03-31 29903 hCoV-19/USA/CA-ALSR-0483-SAN/2020 United States/California/San Diego
MT811446 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0980-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T G4504A C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T G4504A C14408T A23403G G25563T
EPI_ISL_483439 2020-03-31 29880 hCoV-19/USA/CA-ALSR-0980-SAN/2020 United States/California/San Diego
C1059T C3037T G6362A C10188T C14408T A23403G T24982C G25563T C27964T
MT811709 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0279-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T G6362A C10188T C14408T A23403G T24982C G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T G6362A C10188T C14408T A23403G T24982C G25563T C27964T
EPI_ISL_445134 2020-03-31 29903 hCoV-19/USA/LA-SR0279/2020 United States/Louisiana/New Orleans
MT811708 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-0278-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T G6362A C10188T C14408T A23403G T24982C G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T G6362A C10188T C14408T A23403G T24982C G25563T C27964T
EPI_ISL_445133 2020-04-01 29903 hCoV-19/USA/LA-SR0278/2020 United States/Louisiana/New Orleans
C1059T C3037T G6362A C7815T C10188T C14408T A23403G T24982C G25563T T26409C C27964T
MT811695 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-0265-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T G6362A C7815T C10188T C14408T A23403G T24982C G25563T T26409C C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T G6362A C7815T C10188T C14408T A23403G T24982C G25563T T26409C C27964T
EPI_ISL_445120 2020-04-02 29903 hCoV-19/USA/LA-SR0265/2020 United States/Louisiana/New Orleans
C1059T C3037T G6422A C10319T C14408T T16926C A18424G A19974G C21304T G22225T A23403G G25563T G25907T C27964T C28472T C28869T
MT811493 2020-06-20 29409 SARS-CoV-2/human/USA/SEARCH-1057-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T G6422A C10319T C14408T T16926C A18424G A19974G C21304T G22225T A23403G G25563T G25907T C27964T C28472T C28869T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T G6422A C10319T C14408T T16926C A18424G A19974G C21304T G22225T A23403G G25563T G25907T C27964T C28472T C28869T
EPI_ISL_483488 2020-06-20 29880 hCoV-19/USA/CA-ALSR-1057-SAN/2020 United States/California/San Diego
MT811485 2020-06-21 29409 SARS-CoV-2/human/USA/SEARCH-1039-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T G6422A C10319T C14408T T16926C A18424G A19974G C21304T G22225T A23403G G25563T G25907T C27964T C28472T C28869T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCT1- C241T C1059T C3037T G6422A C10319T C14408T T16926C A18424G A19974G C21304T G22225T A23403G G25563T G25907T C27964T C28472T C28869T
EPI_ISL_483478 2020-06-21 29886 hCoV-19/USA/CA-ALSR-1039-SAN/2020 United States/California/San Diego
MT811502 2020-06-22 29409 SARS-CoV-2/human/USA/SEARCH-1067-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T G6422A C10319T C14408T T16926C A18424G A19974G C21304T G22225T A23403G G25563T G25907T C27964T C28472T C28869T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G6422A C10319T C14408T T16926C A18424G A19974G C21304T G22225T A23403G G25563T G25907T C27964T C28472T C28869T
EPI_ISL_483497 2020-06-22 29865 hCoV-19/USA/CA-ALSR-1067-SAN/2020 United States/California/San Diego
C1059T C3037T G8131T C10319T C14408T A23403G G25563T C27964T
MT811713 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0283-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T G8131T C10319T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T G8131T C10319T C14408T A23403G G25563T C27964T
EPI_ISL_445138 2020-03-31 29903 hCoV-19/USA/LA-SR0283/2020 United States/Louisiana/New Orleans
C1059T C3037T T12828C C14408T A23403G A24952G G25563T C27964T C28826T
MT811744 2020-04-07 29409 SARS-CoV-2/human/USA/SEARCH-0323-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T T12828C C14408T A23403G A24952G G25563T C27964T C28826T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T T12828C C14408T A23403G A24952G G25563T C27964T C28826T
EPI_ISL_450177 2020-04-07 29903 hCoV-19/USA/LA-SR0323/2020 United States/Louisiana/New Orleans
C1059T C3037T T12955C C14408T C16762T A23403G G25563T
MT811313 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0684-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T T12955C C14408T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T12955C C14408T C16762T A23403G G25563T
EPI_ISL_483300 2020-03-30 29865 hCoV-19/USA/CA-ALSR-0684-SAN/2020 United States/California/San Diego
MT811326 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0704-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T T12955C C14408T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGG1- C241T C1059T C3037T T12955C C14408T C16762T A23403G G25563T
EPI_ISL_483313 2020-03-30 29895 hCoV-19/USA/CA-ALSR-0704-SAN/2020 United States/California/San Diego
MT811384 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0806-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T T12955C C14408T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T T12955C C14408T C16762T A23403G G25563T
EPI_ISL_483372 2020-03-30 29863 hCoV-19/USA/CA-ALSR-0806-SAN/2020 United States/California/San Diego
MT811442 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0976-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T T12955C C14408T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTT1- C241T C1059T C3037T T12955C C14408T C16762T A23403G G25563T
EPI_ISL_483435 2020-03-30 29893 hCoV-19/USA/CA-ALSR-0976-SAN/2020 United States/California/San Diego
C1059T C3037T T5182C C11916T C14408T C18998T T21075C A23403G G25563T G25947C G27703T G29540A
MT811292 2020-05-15 29409 SARS-CoV-2/human/USA/SEARCH-0649-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T T5182C C11916T C14408T C18998T T21075C A23403G G25563T G25947C G27703T G29540A CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T T5182C C11916T C14408T C18998T T21075C A23403G G25563T G25947C G27703T G29540A
EPI_ISL_483279 2020-05-15 29903 hCoV-19/USA/CA-ALSR-0649-SAN/2020 United States/California/San Diego
MT811305 2020-05-15 29409 SARS-CoV-2/human/USA/SEARCH-0673-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T T5182C C11916T C14408T C18998T T21075C A23403G G25563T G25947C G27703T G29540A CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T T5182C C11916T C14408T C18998T T21075C A23403G G25563T G25947C G27703T G29540A
EPI_ISL_483292 2020-05-15 29864 hCoV-19/USA/CA-ALSR-0673-SAN/2020 United States/California/San Diego
C1059T C3037T T6394C C10319T C14408T C16859T A23403G G25563T C27964T
MT811677 2020-03-28 29409 SARS-CoV-2/human/USA/SEARCH-0163-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T T6394C C10319T C14408T C16859T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T T6394C C10319T C14408T C16859T A23403G G25563T C27964T
EPI_ISL_435466 2020-03-28 29903 hCoV-19/USA/LA-SR0163/2020 United States/Louisiana/New Orleans
MT811749 2020-04-04 29409 SARS-CoV-2/human/USA/SEARCH-0329-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T T6394C C10319T C14408T C16859T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T T6394C C10319T C14408T C16859T A23403G G25563T C27964T
EPI_ISL_450182 2020-04-04 29903 hCoV-19/USA/LA-SR0329/2020 United States/Louisiana/New Orleans
C1059T C3037T T7481A C10319T T12913A C14408T C21789T A23403G G25563T C27964T
MT811755 2020-05-14 29409 SARS-CoV-2/human/USA/SEARCH-0852-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T T7481A C10319T T12913A C14408T C21789T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T T7481A C10319T T12913A C14408T C21789T A23403G G25563T C27964T
EPI_ISL_483399 2020-05-14 29854 hCoV-19/USA/CA-ALSR-0852-NBG/2020 United States/Louisiana/New Orleans
C1059T C3037T T7562C C14408T C19032T T19527C A23403G G25563T C27964T C28099T
MT811683 2020-04-03 29409 SARS-CoV-2/human/USA/SEARCH-0170-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T T7562C C14408T C19032T T19527C A23403G G25563T C27964T C28099T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T C3037T T7562C C14408T C19032T T19527C A23403G G25563T C27964T C28099T
EPI_ISL_435471 2020-04-03 29903 hCoV-19/USA/LA-SR0170/2020 United States/Louisiana/New Orleans
C1059T C3037T TG6007AC G6446A C10681T C14408T G17014T A23403G G25563T
MT810661 2020-04-24 29409 SARS-CoV-2/human/USA/SEARCH-1202-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T C3037T TG6007AC G6446A C10681T C14408T G17014T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C1059T C3037T TG6007AC G6446A C10681T C14408T G17014T A23403G G25563T
EPI_ISL_494434 2020-04-24 29851 hCoV-19/USA/CA-ALSR-1202/2020 United States/California/San Diego
C1059T G1274T C1929T C3037T C6651T C14408T C16762T G19999A A23403G G25563T
MT810087 2020-05-19 29409 SARS-CoV-2/human/USA/SEARCH-0453-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T G1274T C1929T C3037T C6651T C14408T C16762T G19999A A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T G1274T C1929T C3037T C6651T C14408T C16762T G19999A A23403G G25563T
EPI_ISL_467976 2020-05-19 29903 hCoV-19/USA/CA-SR0453/2020 United States/California/San Diego
C1059T G1274T C3037T C14408T C16762T C17491T A23403G G25563T
MT811362 2020-04-09 29409 SARS-CoV-2/human/USA/SEARCH-0774-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T G1274T C3037T C14408T C16762T C17491T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1274T C3037T C14408T C16762T C17491T A23403G G25563T
EPI_ISL_483350 2020-04-09 29849 hCoV-19/USA/CA-ALSR-0774-SAN/2020 United States/California/San Diego
C1059T G2900A C3037T C10319T C14408T A23403G G25563T C27964T
MT811720 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-0290-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T G2900A C3037T C10319T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T G2900A C3037T C10319T C14408T A23403G G25563T C27964T
EPI_ISL_445145 2020-04-01 29903 hCoV-19/USA/LA-SR0290/2020 United States/Louisiana/New Orleans
C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T
MT810530 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-1664-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGT1- C241T C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T
EPI_ISL_494725 2020-04-01 29894 hCoV-19/USA/CA-ALSR-1664/2020 United States/California/San Diego
MT810541 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-1676-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T
EPI_ISL_494736 2020-04-01 29899 hCoV-19/USA/CA-ALSR-1676/2020 United States/California/San Diego
MT810544 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-1681-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATAC1- C241T C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T
EPI_ISL_494739 2020-04-01 29888 hCoV-19/USA/CA-ALSR-1681/2020 United States/California/San Diego
MT810542 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-1677-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATT1- C241T C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T
EPI_ISL_494737 2020-04-02 29900 hCoV-19/USA/CA-ALSR-1677/2020 United States/California/San Diego
MT811367 2020-04-07 29409 SARS-CoV-2/human/USA/SEARCH-0783-SAN/2020 United States/San Diego/California
A TTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T
EPI_ISL_483355 2020-04-07 29863 hCoV-19/USA/CA-ALSR-0783-SAN/2020 United States/California/San Diego
C1059T T1211G C3037T C14408T A23403G G25563T C27964T
MT810524 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-1657-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T T1211G C3037T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T T1211G C3037T C14408T A23403G G25563T C27964T
EPI_ISL_494719 2020-04-01 29854 hCoV-19/USA/CA-ALSR-1657/2020 United States/California/San Diego
MT811209 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-0512-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T T1211G C3037T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T T1211G C3037T C14408T A23403G G25563T C27964T
EPI_ISL_483191 2020-04-02 29865 hCoV-19/USA/CA-ALSR-0512-SAN/2020 United States/California/San Diego
MT811374 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-0794-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T T1211G C3037T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T T1211G C3037T C14408T A23403G G25563T C27964T
EPI_ISL_483362 2020-04-02 29864 hCoV-19/USA/CA-ALSR-0794-SAN/2020 United States/California/San Diego
C1059T T1211G C3037T C14408T G15265A A23403G G24985T G25563T C27964T
MT810567 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0439-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T T1211G C3037T C14408T G15265A A23403G G24985T G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T T1211G C3037T C14408T G15265A A23403G G24985T G25563T C27964T
EPI_ISL_467966 2020-03-30 29903 hCoV-19/USA/CA-SR0439/2020 United States/California/San Diego
C1059T T1936C C3037T C13487T C14408T C16260T C20389T C21707T A23403G C23557T G25563T G26690T C28821A
MT811512 2020-06-23 29409 SARS-CoV-2/human/USA/SEARCH-1080-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T T1936C C3037T C13487T C14408T C16260T C20389T C21707T A23403G C23557T G25563T G26690T C28821A CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T T1936C C3037T C13487T C14408T C16260T C20389T C21707T A23403G C23557T G25563T G26690T C28821A
EPI_ISL_483507 2020-06-23 29877 hCoV-19/USA/CA-ALSR-1080-SAN/2020 United States/California/San Diego
C1059T T1936C C3037T C13487T C14408T C16260T C20389T C21707T A23403G C23557T G25563T G26690T C28821A C29095T
MT811510 2020-06-23 29409 SARS-CoV-2/human/USA/SEARCH-1078-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T T1936C C3037T C13487T C14408T C16260T C20389T C21707T A23403G C23557T G25563T G26690T C28821A C29095T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACC1- C241T C1059T T1936C C3037T C13487T C14408T C16260T C20389T C21707T A23403G C23557T G25563T G26690T C28821A C29095T
EPI_ISL_483505 2020-06-23 29887 hCoV-19/USA/CA-ALSR-1078-SAN/2020 United States/California/San Diego
C1059T T2845C C3037T G3871T C14408T G17278T A23403G G25563T C27964T
MT811670 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-0156-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1059T T2845C C3037T G3871T C14408T G17278T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1059T T2845C C3037T G3871T C14408T G17278T A23403G G25563T C27964T
EPI_ISL_435459 2020-04-02 29903 hCoV-19/USA/LA-SR0156/2020 United States/Louisiana/New Orleans
C1150T C3037T G12518A C14408T A20268G A23403G T24076C C28854T
MT810710 2020-05-01 29409 SARS-CoV-2/human/USA/SEARCH-1290-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1150T C3037T G12518A C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAG1- C241T C1150T C3037T G12518A C14408T A20268G A23403G T24076C C28854T
EPI_ISL_494483 2020-05-01 29896 hCoV-19/USA/CA-ALSR-1290/2020 United States/California/San Diego
C1191T C3037T C4455T C7768T C11575T C14408T G15535T A20268G A23403G T26100A T27438C C28854T
MT811529 2020-06-18 29409 SARS-CoV-2/human/USA/SEARCH-1097-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1191T C3037T C4455T C7768T C11575T C14408T G15535T A20268G A23403G T26100A T27438C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1191T C3037T C4455T C7768T C11575T C14408T G15535T A20268G A23403G T26100A T27438C C28854T
EPI_ISL_483524 2020-06-18 29865 hCoV-19/USA/CA-ALSR-1097-SAN/2020 United States/California/San Diego
C1288T C3037T C11575T C14408T A20268G A23403G C28854T
MT810775 2020-04-22 29409 SARS-CoV-2/human/MEX/SEARCH-1701-TIJ/2020 Mexico/Tijuana/BajaCalifornia
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1288T C3037T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTAT1- C241T C1288T C3037T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_496362 2020-04-22 29890 hCoV-19/Mexico/ALSR-1701/2020 Mexico/Baja California/Tijuana
MT811306 2020-05-01 29409 SARS-CoV-2/human/USA/SEARCH-0674-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1288T C3037T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1288T C3037T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_483293 2020-05-01 29856 hCoV-19/USA/CA-ALSR-0674-IPL/2020 United States/California/Imperial
MT811231 2020-05-04 29409 SARS-CoV-2/human/USA/SEARCH-0548-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1288T C3037T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGG1- C241T C1288T C3037T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_483215 2020-05-04 29895 hCoV-19/USA/CA-ALSR-0548-IPL/2020 United States/California/Imperial
MT811235 2020-05-04 29409 SARS-CoV-2/human/USA/SEARCH-0553-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1288T C3037T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C1288T C3037T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_483219 2020-05-04 29899 hCoV-19/USA/CA-ALSR-0553-IPL/2020 United States/California/Imperial
MT811337 2020-05-04 29409 SARS-CoV-2/human/USA/SEARCH-0722-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1288T C3037T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1288T C3037T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_483324 2020-05-04 29903 hCoV-19/USA/CA-ALSR-0722-SAN/2020 United States/California/San Diego
MT811338 2020-05-04 29409 SARS-CoV-2/human/USA/SEARCH-0724-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1288T C3037T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1288T C3037T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_483325 2020-05-04 29868 hCoV-19/USA/CA-ALSR-0724-IPL/2020 United States/California/Imperial
C1288T C3037T C11575T C14408T A20268G A23403G T25556G C28854T
MT810942 2020-04-06 29409 SARS-CoV-2/human/USA/SEARCH-0225-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1288T C3037T C11575T C14408T A20268G A23403G T25556G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1288T C3037T C11575T C14408T A20268G A23403G T25556G C28854T
EPI_ISL_437575 2020-04-06 29903 hCoV-19/USA/CA-SR0225/2020 United States/California/San Diego
C1288T C3037T C11575T C14408T A20268G C20451T A23403G C28854T
MT810655 2020-04-28 29409 SARS-CoV-2/human/USA/SEARCH-1192-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1288T C3037T C11575T C14408T A20268G C20451T A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTT1- C241T C1288T C3037T C11575T C14408T A20268G C20451T A23403G C28854T
EPI_ISL_494428 2020-04-28 29892 hCoV-19/USA/CA-ALSR-1192/2020 United States/California/San Diego
C1385T C3037T C11941T C14408T A20268G A23403G C28854T
MT810496 2020-05-04 29409 SARS-CoV-2/human/USA/SEARCH-1413-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1385T C3037T C11941T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1385T C3037T C11941T C14408T A20268G A23403G C28854T
EPI_ISL_494588 2020-05-04 29854 hCoV-19/USA/CA-ALSR-1413/2020 United States/California/San Diego
C1385T C3037T C11941T C14408T A20268G G22021T A23403G C28854T
MT810684 2020-05-06 29409 SARS-CoV-2/human/USA/SEARCH-1248-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1385T C3037T C11941T C14408T A20268G G22021T A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1385T C3037T C11941T C14408T A20268G G22021T A23403G C28854T
EPI_ISL_494457 2020-05-06 29858 hCoV-19/USA/CA-ALSR-1248/2020 United States/California/San Diego
C1457T C3037T -3074GAA T11857C C14408T C19662T A20268G A23403G T24076C C28854T
MT810701 2020-05-05 29412 SARS-CoV-2/human/USA/SEARCH-1276-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1457T C3037T -3074GAA T11857C C14408T C19662T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1457T C3037T -3074GAA T11857C C14408T C19662T A20268G A23403G T24076C C28854T
EPI_ISL_494474 2020-05-05 29857 hCoV-19/USA/CA-ALSR-1276/2020 United States/California/San Diego
C1457T C3037T C14408T A20268G A23403G T24076C C24588T C28854T C29118T
MT810839 2020-05-11 29409 SARS-CoV-2/human/USA/SEARCH-1514-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C24588T C28854T C29118T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C24588T C28854T C29118T
EPI_ISL_494636 2020-05-11 29854 hCoV-19/USA/CA-ALSR-1514/2020 United States/California/San Diego
C1457T C3037T C14408T A20268G A23403G T24076C C28531T C28854T
MT810501 2020-04-21 29409 SARS-CoV-2/human/USA/SEARCH-1422-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C28531T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C28531T C28854T
EPI_ISL_494593 2020-04-21 29865 hCoV-19/USA/CA-ALSR-1422/2020 United States/California/San Diego
C1457T C3037T C14408T A20268G A23403G T24076C C28854T
MT810550 2020-04-20 29409 SARS-CoV-2/human/USA/SEARCH-1688-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_494745 2020-04-20 29872 hCoV-19/USA/CA-ALSR-1688/2020 United States/California/San Diego
MT810659 2020-04-24 29409 SARS-CoV-2/human/USA/SEARCH-1200-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_494432 2020-04-24 29856 hCoV-19/USA/CA-ALSR-1200/2020 United States/California/San Diego
MT810670 2020-04-24 29409 SARS-CoV-2/human/USA/SEARCH-1217-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_494443 2020-04-24 29864 hCoV-19/USA/CA-ALSR-1217/2020 United States/California/San Diego
MT810950 2020-04-26 29409 SARS-CoV-2/human/USA/SEARCH-0236-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_437568 2020-04-26 29903 hCoV-19/USA/CA-SR0236/2020 United States/California/San Diego
MT810603 2020-04-27 29409 SARS-CoV-2/human/USA/SEARCH-1124-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_494376 2020-04-27 29903 hCoV-19/USA/CA-ALSR-1124/2020 United States/California/San Diego
MT810620 2020-04-27 29409 SARS-CoV-2/human/USA/SEARCH-1148-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_494393 2020-04-27 29865 hCoV-19/USA/CA-ALSR-1148/2020 United States/California/San Diego
MT810615 2020-04-28 29409 SARS-CoV-2/human/USA/SEARCH-1143-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTA1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_494388 2020-04-28 29891 hCoV-19/USA/CA-ALSR-1143/2020 United States/California/San Diego
MT810650 2020-04-28 29409 SARS-CoV-2/human/USA/SEARCH-1187-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_494423 2020-04-28 29899 hCoV-19/USA/CA-ALSR-1187/2020 United States/California/San Diego
MT810499 2020-05-04 29409 SARS-CoV-2/human/USA/SEARCH-1418-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_494591 2020-05-04 29865 hCoV-19/USA/CA-ALSR-1418/2020 United States/California/San Diego
MT810841 2020-05-04 29409 SARS-CoV-2/human/USA/SEARCH-1517-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_494639 2020-05-04 29856 hCoV-19/USA/CA-ALSR-1517/2020 United States/California/San Diego
MT810088 2020-05-19 29409 SARS-CoV-2/human/USA/SEARCH-0459-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_467981 2020-05-19 29903 hCoV-19/USA/CA-SR0459/2020 United States/California/San Diego
C1457T C3037T C14408T A20268G C21058T A23403G T24076C C28854T
MT810838 2020-05-12 29409 SARS-CoV-2/human/USA/SEARCH-1513-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1457T C3037T C14408T A20268G C21058T A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTT1- C241T C1457T C3037T C14408T A20268G C21058T A23403G T24076C C28854T
EPI_ISL_494635 2020-05-12 29892 hCoV-19/USA/CA-ALSR-1513/2020 United States/California/San Diego
C1457T C3037T C14408T C14925T A20268G A23403G T24076C C28854T
MT810865 2020-04-30 29409 SARS-CoV-2/human/USA/SEARCH-1570-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1457T C3037T C14408T C14925T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTT1- C241T C1457T C3037T C14408T C14925T A20268G A23403G T24076C C28854T
EPI_ISL_494664 2020-04-30 29893 hCoV-19/USA/CA-ALSR-1570/2020 United States/California/San Diego
C1457T C3037T C6848T C14408T A20268G A23403G T24076C C28854T
MT810690 2020-04-27 29409 SARS-CoV-2/human/USA/SEARCH-1262-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1457T C3037T C6848T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
AT1- C241T C1457T C3037T C6848T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_494463 2020-04-27 29901 hCoV-19/USA/CA-ALSR-1262/2020 United States/California/San Diego
MT810702 2020-04-30 29409 SARS-CoV-2/human/USA/SEARCH-1277-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1457T C3037T C6848T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATA1- C241T C1457T C3037T C6848T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_494475 2020-04-30 29889 hCoV-19/USA/CA-ALSR-1277/2020 United States/California/San Diego
C1457T C3037T T11857C C14408T C15720T C19662T A20268G A23403G T24076C C28854T
MT810681 2020-05-04 29409 SARS-CoV-2/human/USA/SEARCH-1240-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1457T C3037T T11857C C14408T C15720T C19662T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
AT1- C241T C1457T C3037T T11857C C14408T C15720T C19662T A20268G A23403G T24076C C28854T
EPI_ISL_494454 2020-05-04 29901 hCoV-19/USA/CA-ALSR-1240/2020 United States/California/San Diego
C1457T C3037T T11857C C14408T C19662T A20268G A23403G T24076C C28854T
MT810717 2020-05-02 29409 SARS-CoV-2/human/USA/SEARCH-1314-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1457T C3037T T11857C C14408T C19662T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1457T C3037T T11857C C14408T C19662T A20268G A23403G T24076C C28854T
EPI_ISL_494490 2020-05-02 29854 hCoV-19/USA/CA-ALSR-1314/2020 United States/California/San Diego
C1568T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T
MT810638 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-1169-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1568T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1568T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T
EPI_ISL_494411 2020-04-02 29854 hCoV-19/USA/CA-ALSR-1169/2020 United States/California
C1593T T1983C G2914C C3037T C14408T A20268G A23403G C28854T
MT811496 2020-06-20 29409 SARS-CoV-2/human/USA/SEARCH-1060-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1593T T1983C G2914C C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1593T T1983C G2914C C3037T C14408T A20268G A23403G C28854T
EPI_ISL_483491 2020-06-20 29865 hCoV-19/USA/CA-ALSR-1060-SAN/2020 United States/California/San Diego
C1627T C3037T C9430T C14408T C14925T G19969A A20268G A23403G C24031T G28001C T28251G CA28253TC C28744T C28854T
MT811533 2020-06-18 29409 SARS-CoV-2/human/USA/SEARCH-1102-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1627T C3037T C9430T C14408T C14925T G19969A A20268G A23403G C24031T G28001C T28251G CA28253TC C28744T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1627T C3037T C9430T C14408T C14925T G19969A A20268G A23403G C24031T G28001C T28251G CA28253TC C28744T C28854T
EPI_ISL_483528 2020-06-18 29865 hCoV-19/USA/CA-ALSR-1102-SAN/2020 United States/California/San Diego
C1884T C3037T G9389A C14408T A20268G A23403G C28854T C28887T
MT811523 2020-06-13 29409 SARS-CoV-2/human/USA/SEARCH-1091-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1884T C3037T G9389A C14408T A20268G A23403G C28854T C28887T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1884T C3037T G9389A C14408T A20268G A23403G C28854T C28887T
EPI_ISL_483518 2020-06-13 29865 hCoV-19/USA/CA-ALSR-1091-SAN/2020 United States/California/San Diego
C1911T C3037T C14408T A20268G A23403G T24076C C25831T C28854T
MT811301 2020-04-19 29409 SARS-CoV-2/human/USA/SEARCH-0663-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1911T C3037T C14408T A20268G A23403G T24076C C25831T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1911T C3037T C14408T A20268G A23403G T24076C C25831T C28854T
EPI_ISL_483288 2020-04-19 29856 hCoV-19/USA/CA-ALSR-0663-IPL/2020 United States/California/Imperial
C1911T C3037T C14408T C15810T A20268G A23403G T24076C C28854T
MT811352 2020-04-10 29409 SARS-CoV-2/human/USA/SEARCH-0760-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1911T C3037T C14408T C15810T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1911T C3037T C14408T C15810T A20268G A23403G T24076C C28854T
EPI_ISL_483339 2020-04-10 29878 hCoV-19/USA/CA-ALSR-0760-IPL/2020 United States/California/Imperial
MT811200 2020-04-13 29409 SARS-CoV-2/human/USA/SEARCH-0497-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1911T C3037T C14408T C15810T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGT1- C241T C1911T C3037T C14408T C15810T A20268G A23403G T24076C C28854T
EPI_ISL_483182 2020-04-13 29894 hCoV-19/USA/CA-ALSR-0497-IPL/2020 United States/California/Imperial
MT811351 2020-04-13 29409 SARS-CoV-2/human/USA/SEARCH-0759-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1911T C3037T C14408T C15810T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1911T C3037T C14408T C15810T A20268G A23403G T24076C C28854T
EPI_ISL_483338 2020-04-13 29878 hCoV-19/USA/CA-ALSR-0759-IPL/2020 United States/California/Imperial
C1911T C3037T C7043T C14408T A20268G A23403G T24076C C28854T
MT811262 2020-04-15 29409 SARS-CoV-2/human/USA/SEARCH-0597-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1911T C3037T C7043T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C1911T C3037T C7043T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_483248 2020-04-15 29899 hCoV-19/USA/CA-ALSR-0597-IPL/2020 United States/California/Imperial
MT811264 2020-04-15 29409 SARS-CoV-2/human/USA/SEARCH-0602-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1911T C3037T C7043T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C1911T C3037T C7043T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_483250 2020-04-15 29899 hCoV-19/USA/CA-ALSR-0602-IPL/2020 United States/California/Imperial
C1912T C3037T C14408T A15283G T15432C A20268G A23403G T24076C G28300T C28854T
MT810848 2020-05-13 29409 SARS-CoV-2/human/USA/SEARCH-1533-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1912T C3037T C14408T A15283G T15432C A20268G A23403G T24076C G28300T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1912T C3037T C14408T A15283G T15432C A20268G A23403G T24076C G28300T C28854T
EPI_ISL_494647 2020-05-13 29856 hCoV-19/USA/CA-ALSR-1533/2020 United States/California/San Diego
C1962T C3037T C14408T A23403G C25350T C25566T
MT810637 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-1168-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1962T C3037T C14408T A23403G C25350T C25566T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAA1- C241T C1962T C3037T C14408T A23403G C25350T C25566T
EPI_ISL_494410 2020-04-02 29897 hCoV-19/USA/CA-ALSR-1168/2020 United States/California
C1997T C3037T C4582T C11102T C14408T A20268G A23403G
MT810568 2020-03-27 29409 SARS-CoV-2/human/USA/SEARCH-0440-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C1997T C3037T C4582T C11102T C14408T A20268G A23403G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C1997T C3037T C4582T C11102T C14408T A20268G A23403G
EPI_ISL_467967 2020-03-27 29903 hCoV-19/USA/CA-SR0440/2020 United States/California/San Diego
C2062T C3037T C14408T A20268G A23403G C28854T
MT811241 2020-05-10 29409 SARS-CoV-2/human/USA/SEARCH-0563-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2062T C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C2062T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_483225 2020-05-10 29899 hCoV-19/USA/CA-ALSR-0563-SAN/2020 United States/California/San Diego
C2143T A2596G C3037T C7768T C11575T C14408T A20268G A23403G C28854T
MT810591 2020-06-21 29409 SARS-CoV-2/human/USA/SEARCH-1111-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2143T A2596G C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2143T A2596G C3037T C7768T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_483534 2020-06-21 29854 hCoV-19/USA/CA-ALSR-1111-SAN/2020 United States/California/San Diego
C2143T A2596G C3037T C7768T C11575T C14408T A20268G C21859T A23403G C28854T
MT810588 2020-06-25 29409 SARS-CoV-2/human/USA/SEARCH-1107-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2143T A2596G C3037T C7768T C11575T C14408T A20268G C21859T A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2143T A2596G C3037T C7768T C11575T C14408T A20268G C21859T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-
EPI_ISL_483531 2020-06-25 29787 hCoV-19/USA/CA-ALSR-1107-SAN/2020 United States/California/San Diego
MT810594 2020-06-25 29409 SARS-CoV-2/human/USA/SEARCH-1114-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2143T A2596G C3037T C7768T C11575T C14408T A20268G C21859T A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAG1- C241T C2143T A2596G C3037T C7768T C11575T C14408T A20268G C21859T A23403G C28854T
EPI_ISL_483537 2020-06-25 29896 hCoV-19/USA/CA-ALSR-1114-SAN/2020 United States/California/San Diego
C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T
MT810598 2020-06-21 29409 SARS-CoV-2/human/USA/SEARCH-1118-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_483541 2020-06-21 29854 hCoV-19/USA/CA-ALSR-1118-SAN/2020 United States/California/San Diego
MT810592 2020-06-22 29409 SARS-CoV-2/human/USA/SEARCH-1112-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAA1- C241T C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_483535 2020-06-22 29897 hCoV-19/USA/CA-ALSR-1112-SAN/2020 United States/California/San Diego
MT810593 2020-06-23 29409 SARS-CoV-2/human/USA/SEARCH-1113-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- T13C C241T C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_483536 2020-06-23 29899 hCoV-19/USA/CA-ALSR-1113-SAN/2020 United States/California/San Diego
MT810595 2020-06-23 29409 SARS-CoV-2/human/USA/SEARCH-1115-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_483538 2020-06-23 29856 hCoV-19/USA/CA-ALSR-1115-SAN/2020 United States/California/San Diego
MT810597 2020-06-23 29409 SARS-CoV-2/human/USA/SEARCH-1117-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_483540 2020-06-23 29864 hCoV-19/USA/CA-ALSR-1117-SAN/2020 United States/California/San Diego
MT810589 2020-06-25 29409 SARS-CoV-2/human/USA/SEARCH-1108-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATAC1- C241T C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_483532 2020-06-25 29888 hCoV-19/USA/CA-ALSR-1108-SAN/2020 United States/California/San Diego
C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T
MT811522 2020-06-15 29409 SARS-CoV-2/human/USA/SEARCH-1090-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAA1- C241T C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_483517 2020-06-15 29897 hCoV-19/USA/CA-ALSR-1090-SAN/2020 United States/California/San Diego
MT810590 2020-06-18 29409 SARS-CoV-2/human/USA/SEARCH-1110-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-
EPI_ISL_483533 2020-06-18 29790 hCoV-19/USA/CA-ALSR-1110-SAN/2020 United States/California/San Diego
MT811525 2020-06-18 29409 SARS-CoV-2/human/USA/SEARCH-1093-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_483520 2020-06-18 29865 hCoV-19/USA/CA-ALSR-1093-SAN/2020 United States/California/San Diego
MT811501 2020-06-22 29409 SARS-CoV-2/human/USA/SEARCH-1066-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAG1- C241T C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_483496 2020-06-22 29880 hCoV-19/USA/CA-ALSR-1066-SAN/2020 United States/California/San Diego
MT811508 2020-06-22 29409 SARS-CoV-2/human/USA/SEARCH-1076-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_483503 2020-06-22 29899 hCoV-19/USA/CA-ALSR-1076-SAN/2020 United States/California/San Diego
MT811517 2020-06-23 29409 SARS-CoV-2/human/USA/SEARCH-1085-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_483512 2020-06-23 29864 hCoV-19/USA/CA-ALSR-1085-SAN/2020 United States/California/San Diego
C2143T C3037T C7768T C11575T C14408T A20268G A23403G G27461T A28225G C28854T
MT811534 2020-06-18 29409 SARS-CoV-2/human/USA/SEARCH-1104-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2143T C3037T C7768T C11575T C14408T A20268G A23403G G27461T A28225G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGG1- C241T C2143T C3037T C7768T C11575T C14408T A20268G A23403G G27461T A28225G C28854T
EPI_ISL_483529 2020-06-18 29895 hCoV-19/USA/CA-ALSR-1104-SAN/2020 United States/California/San Diego
C2143T C3037T T3144C C7768T C11575T A14041G C14408T A20268G A23403G A24777T C28854T
MT811487 2020-06-19 29409 SARS-CoV-2/human/USA/SEARCH-1044-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2143T C3037T T3144C C7768T C11575T A14041G C14408T A20268G A23403G A24777T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2143T C3037T T3144C C7768T C11575T A14041G C14408T A20268G A23403G A24777T C28854T
EPI_ISL_483480 2020-06-19 29864 hCoV-19/USA/CA-ALSR-1044-SAN/2020 United States/California/San Diego
C2395T C3037T A10042T C14408T C19113T A20268G G21786T A23403G C28854T
MT811008 2020-04-21 29409 SARS-CoV-2/human/USA/SEARCH-0399-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2395T C3037T A10042T C14408T C19113T A20268G G21786T A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C2395T C3037T A10042T C14408T C19113T A20268G G21786T A23403G C28854T
EPI_ISL_458272 2020-04-21 29903 hCoV-19/USA/CA-SR0399/2020 United States/California/San Diego
C2395T C3037T C14408T A20268G G21786T A23403G C28854T
MT810888 2020-05-19 29409 SARS-CoV-2/human/USA/SEARCH-1614-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2395T C3037T C14408T A20268G G21786T A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2395T C3037T C14408T A20268G G21786T A23403G C28854T
EPI_ISL_494687 2020-05-19 29854 hCoV-19/USA/CA-ALSR-1614/2020 United States/California/San Diego
C2416T C3037T C14408T C17104T A23403G G25563T
MT811453 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0990-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2416T C3037T C14408T C17104T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2416T C3037T C14408T C17104T A23403G G25563T
EPI_ISL_483446 2020-03-30 29864 hCoV-19/USA/CA-ALSR-0990-SAN/2020 United States/California/San Diego
C2594T C3037T C4582T A5431G C11102T C14408T A17757G A20268G A23403G
MT811233 2020-05-07 29409 SARS-CoV-2/human/USA/SEARCH-0551-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2594T C3037T C4582T A5431G C11102T C14408T A17757G A20268G A23403G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C2594T C3037T C4582T A5431G C11102T C14408T A17757G A20268G A23403G
EPI_ISL_483217 2020-05-07 29903 hCoV-19/USA/CA-ALSR-0551-IPL/2020 United States/California/Imperial
C2594T C3037T C4582T C11102T C14408T A17757G A20268G C21541T A23403G
MT811348 2020-05-13 29409 SARS-CoV-2/human/USA/SEARCH-0755-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2594T C3037T C4582T C11102T C14408T A17757G A20268G C21541T A23403G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
AT1- C241T C2594T C3037T C4582T C11102T C14408T A17757G A20268G C21541T A23403G
EPI_ISL_483335 2020-05-13 29901 hCoV-19/USA/CA-ALSR-0755-IPL/2020 United States/California/Imperial
MT811349 2020-05-13 29409 SARS-CoV-2/human/USA/SEARCH-0756-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2594T C3037T C4582T C11102T C14408T A17757G A20268G C21541T A23403G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2594T C3037T C4582T C11102T C14408T A17757G A20268G C21541T A23403G
EPI_ISL_483336 2020-05-13 29865 hCoV-19/USA/CA-ALSR-0756-IPL/2020 United States/California/Imperial
C2594T C3037T C4582T C11102T C14408T A20268G A23403G
MT811203 2020-04-15 29409 SARS-CoV-2/human/USA/SEARCH-0501-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2594T C3037T C4582T C11102T C14408T A20268G A23403G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C2594T C3037T C4582T C11102T C14408T A20268G A23403G
EPI_ISL_483185 2020-04-15 29858 hCoV-19/USA/CA-ALSR-0501-IPL/2020 United States/California/Imperial
MT811356 2020-04-15 29409 SARS-CoV-2/human/USA/SEARCH-0765-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2594T C3037T C4582T C11102T C14408T A20268G A23403G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACC1- C241T C2594T C3037T C4582T C11102T C14408T A20268G A23403G
EPI_ISL_483344 2020-04-15 29887 hCoV-19/USA/CA-ALSR-0765-IPL/2020 United States/California/Imperial
C2594T C3037T C4582T C11102T C14408T T17033C A20268G G21518A A23403G C23679T
MT811296 2020-04-18 29409 SARS-CoV-2/human/USA/SEARCH-0658-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2594T C3037T C4582T C11102T C14408T T17033C A20268G G21518A A23403G C23679T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C2594T C3037T C4582T C11102T C14408T T17033C A20268G G21518A A23403G C23679T
EPI_ISL_483283 2020-04-18 29903 hCoV-19/USA/CA-ALSR-0658-IPL/2020 United States/California/Imperial
C2700T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T
MT810625 2020-04-04 29409 SARS-CoV-2/human/USA/SEARCH-1155-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2700T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2700T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T
EPI_ISL_494398 2020-04-04 29854 hCoV-19/USA/CA-ALSR-1155/2020 United States/California
C2881T C3037T C6628T C11572T C14408T C19550T A20268G A23403G A24667G C28854T
MT811497 2020-06-20 29409 SARS-CoV-2/human/USA/SEARCH-1061-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2881T C3037T C6628T C11572T C14408T C19550T A20268G A23403G A24667G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTT1- C241T C2881T C3037T C6628T C11572T C14408T C19550T A20268G A23403G A24667G C28854T
EPI_ISL_483492 2020-06-20 29892 hCoV-19/USA/CA-ALSR-1061-SAN/2020 United States/California/San Diego
C2973T C3037T C4777T C7011T T10955C C14408T A23403G CCAGATCAGTTT27629- G28551T GGG28881AAC
MT810653 2020-04-28 29397 SARS-CoV-2/human/USA/SEARCH-1190-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C2973T C3037T C4777T C7011T T10955C C14408T A23403G CCAGATCAGTTT27629- G28551T GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2973T C3037T C4777T C7011T T10955C C14408T A23403G CCAGATCAGTTT27629- G28551T GGG28881AAC
EPI_ISL_494426 2020-04-28 29852 hCoV-19/USA/CA-ALSR-1190/2020 United States/California/San Diego
C3033T C3037T C4582T C8175T C14408T G16416C T18352C A20268G C22227T A23403G C28744T
MT811519 2020-06-02 29409 SARS-CoV-2/human/USA/SEARCH-1087-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3033T C3037T C4582T C8175T C14408T G16416C T18352C A20268G C22227T A23403G C28744T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAG1- C21T C241T C3033T C3037T C4582T C8175T C14408T G16416C T18352C A20268G C22227T A23403G C28744T
EPI_ISL_483514 2020-06-02 29896 hCoV-19/USA/CA-ALSR-1087-SAN/2020 United States/California/San Diego
C3037T A10197G C14408T A20268G A23403G A23720G C28854T
MT810705 2020-05-01 29409 SARS-CoV-2/human/USA/SEARCH-1282-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T A10197G C14408T A20268G A23403G A23720G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAG1- C241T A253G C3037T A10197G C14408T A20268G A23403G A23720G C28854T
EPI_ISL_494478 2020-05-01 29896 hCoV-19/USA/CA-ALSR-1282/2020 United States/California/San Diego
C3037T A12082T G13403A C14408T A20268G C21595T A23403G T25942C C28854T
MT810687 2020-05-06 29409 SARS-CoV-2/human/USA/SEARCH-1256-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T A12082T G13403A C14408T A20268G C21595T A23403G T25942C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T A12082T G13403A C14408T A20268G C21595T A23403G T25942C C28854T
EPI_ISL_494460 2020-05-06 29858 hCoV-19/USA/CA-ALSR-1256/2020 United States/California/San Diego
C3037T A12875G C14408T A20268G A23403G C28854T
MT811007 2020-04-29 29409 SARS-CoV-2/human/USA/SEARCH-0398-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T A12875G C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T A12875G C14408T A20268G A23403G C28854T
EPI_ISL_458271 2020-04-29 29903 hCoV-19/USA/CA-SR0398/2020 United States/California/San Diego
C3037T A3337G C5241T C14408T A23403G C25350T C25566T
MT810599 2020-04-03 29409 SARS-CoV-2/human/USA/SEARCH-1119-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T A3337G C5241T C14408T A23403G C25350T C25566T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T A3337G C5241T C14408T A23403G C25350T C25566T
EPI_ISL_494372 2020-04-03 29862 hCoV-19/USA/CA-ALSR-1119/2020 United States/California
C3037T A8805C C11575T C14408T C16887T C19029T A20268G A23403G C28854T
MT810782 2020-04-20 29409 SARS-CoV-2/human/MEX/SEARCH-1708-TIJ/2020 Mexico/Tijuana/BajaCalifornia
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T A8805C C11575T C14408T C16887T C19029T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A8805C C11575T C14408T C16887T C19029T A20268G A23403G C28854T
EPI_ISL_496369 2020-04-20 29873 hCoV-19/Mexico/ALSR-1708/2020 Mexico/Baja California/Tijuana
C3037T C10039A C14408T A20268G A23403G T24076C G26167T C28854T
MT811532 2020-06-17 29409 SARS-CoV-2/human/USA/SEARCH-1101-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C10039A C14408T A20268G A23403G T24076C G26167T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGG1- C241T C3037T C10039A C14408T A20268G A23403G T24076C G26167T C28854T
EPI_ISL_483527 2020-06-17 29895 hCoV-19/USA/CA-ALSR-1101-SAN/2020 United States/California/San Diego
C3037T C10156T C14408T A20268G A23403G T24076C C28854T
MT811219 2020-04-10 29409 SARS-CoV-2/human/USA/SEARCH-0525-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C10156T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTA1- C241T C3037T C10156T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_483202 2020-04-10 29891 hCoV-19/USA/CA-ALSR-0525-IPL/2020 United States/California/Imperial
MT811359 2020-04-10 29409 SARS-CoV-2/human/USA/SEARCH-0771-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C10156T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10156T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_483347 2020-04-10 29849 hCoV-19/USA/CA-ALSR-0771-IPL/2020 United States/California/Imperial
C3037T C10277T C14408T A23403G C23638T T26960C G28079T GGG28881AAC
MT811242 2020-05-12 29409 SARS-CoV-2/human/USA/SEARCH-0565-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C10277T C14408T A23403G C23638T T26960C G28079T GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10277T C14408T A23403G C23638T T26960C G28079T GGG28881AAC
EPI_ISL_483226 2020-05-12 29865 hCoV-19/USA/CA-ALSR-0565-SAN/2020 United States/California/San Diego
C3037T C10605T C14408T C14708T A20268G A23403G C24026T G26193T C28854T C29153A
MT810703 2020-04-30 29409 SARS-CoV-2/human/USA/SEARCH-1279-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C10605T C14408T C14708T A20268G A23403G C24026T G26193T C28854T C29153A CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C10605T C14408T C14708T A20268G A23403G C24026T G26193T C28854T C29153A
EPI_ISL_494476 2020-04-30 29903 hCoV-19/USA/CA-ALSR-1279/2020 United States/California/San Diego
C3037T C11020T C14408T A20268G A23403G T24076C C28854T
MT811206 2020-04-01 29409 SARS-CoV-2/human/USA/SEARCH-0505-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C11020T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C3037T C11020T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_483188 2020-04-01 29899 hCoV-19/USA/CA-ALSR-0505-SAN/2020 United States/California/San Diego
C3037T C11074T C14408T A23403G C25350T C25566T
MT810619 2020-04-06 29409 SARS-CoV-2/human/USA/SEARCH-1147-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C11074T C14408T A23403G C25350T C25566T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
AT1- C241T C3037T C11074T C14408T A23403G C25350T C25566T
EPI_ISL_494392 2020-04-06 29901 hCoV-19/USA/CA-ALSR-1147/2020 United States/California
C3037T C11289T C14408T G19735T A20268G G21786T A23403G C28087T C28854T
MT810731 2020-05-07 29409 SARS-CoV-2/human/USA/SEARCH-1343-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C11289T C14408T G19735T A20268G G21786T A23403G C28087T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C11289T C14408T G19735T A20268G G21786T A23403G C28087T C28854T
EPI_ISL_494503 2020-05-07 29903 hCoV-19/USA/CA-ALSR-1343/2020 United States/California/San Diego
C3037T C11620T C14408T A20268G A23403G G27358T C27903T C28854T
MT810850 2020-05-04 29409 SARS-CoV-2/human/USA/SEARCH-1536-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C11620T C14408T A20268G A23403G G27358T C27903T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11620T C14408T A20268G A23403G G27358T C27903T C28854T
EPI_ISL_494649 2020-05-04 29863 hCoV-19/USA/CA-ALSR-1536/2020 United States/California/San Diego
C3037T C11674T C14408T A20268G G22799A A23403G C28854T
MT810693 2020-04-28 29409 SARS-CoV-2/human/USA/SEARCH-1266-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C11674T C14408T A20268G G22799A A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C11674T C14408T A20268G G22799A A23403G C28854T
EPI_ISL_494466 2020-04-28 29858 hCoV-19/USA/CA-ALSR-1266/2020 United States/California/San Diego
C3037T C12488T C14408T A22108G A23403G C25528T G27084A C28344T GGG28881AAC
MT811490 2020-06-21 29409 SARS-CoV-2/human/USA/SEARCH-1050-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C12488T C14408T A22108G A23403G C25528T G27084A C28344T GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C3037T C12488T C14408T A22108G A23403G C25528T G27084A C28344T GGG28881AAC
EPI_ISL_483483 2020-06-21 29899 hCoV-19/USA/CA-ALSR-1050-SAN/2020 United States/California/San Diego
C3037T C12488T C14408T A23403G C25528T G27084A GGG28881AAC
MT811531 2020-06-17 29409 SARS-CoV-2/human/USA/SEARCH-1100-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C12488T C14408T A23403G C25528T G27084A GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G252T C3037T C12488T C14408T A23403G C25528T G27084A GGG28881AAC
EPI_ISL_483526 2020-06-17 29865 hCoV-19/USA/CA-ALSR-1100-SAN/2020 United States/California/San Diego
C3037T C12854T C14408T A20268G A23403G C28854T
MT810587 2020-04-15 29409 SARS-CoV-2/human/USA/SEARCH-0474-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C12854T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAA1- C241T C3037T C12854T C14408T A20268G A23403G C28854T
EPI_ISL_483164 2020-04-15 29898 hCoV-19/USA/CA-ALSR-0474-SAN/2020 United States/California/San Diego
C3037T C13860T C14408T C16017T A23403G C24718A C25046T T27212C G27561T C27600T C29421T
MT811511 2020-06-23 29409 SARS-CoV-2/human/USA/SEARCH-1079-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C13860T C14408T C16017T A23403G C24718A C25046T T27212C G27561T C27600T C29421T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A187G C241T C3037T C13860T C14408T C16017T A23403G C24718A C25046T T27212C G27561T C27600T C29421T
EPI_ISL_483506 2020-06-23 29865 hCoV-19/USA/CA-ALSR-1079-SAN/2020 United States/California/San Diego
C3037T C14184T C14408T A20268G A23403G T24076C C28854T
MT810883 2020-04-27 29409 SARS-CoV-2/human/USA/SEARCH-1596-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14184T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGT1- C21T C241T C3037T C14184T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_494682 2020-04-27 29894 hCoV-19/USA/CA-ALSR-1596/2020 United States/California/San Diego
C3037T C14408T A15363G A20268G A23403G T24076C C28854T
MT811289 2020-04-30 29409 SARS-CoV-2/human/USA/SEARCH-0643-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A15363G A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
AT1- C241T C3037T C14408T A15363G A20268G A23403G T24076C C28854T
EPI_ISL_483276 2020-04-30 29901 hCoV-19/USA/CA-ALSR-0643-IPL/2020 United States/California/Imperial
MT811410 2020-04-30 29409 SARS-CoV-2/human/USA/SEARCH-0899-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A15363G A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A15363G A20268G A23403G T24076C C28854T
EPI_ISL_483403 2020-04-30 29864 hCoV-19/USA/CA-ALSR-0899-IPL/2020 United States/California/Imperial
C3037T C14408T A16474G G18679A A20268G G21204T A23403G C28854T C28887T
MT811340 2020-05-14 29409 SARS-CoV-2/human/USA/SEARCH-0726-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A16474G G18679A A20268G G21204T A23403G C28854T C28887T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C14408T A16474G G18679A A20268G G21204T A23403G C28854T C28887T
EPI_ISL_483327 2020-05-14 29880 hCoV-19/USA/CA-ALSR-0726-IPL/2020 United States/California/Imperial
C3037T C14408T A19385C A20268G A23403G C28854T C29167T
MT810769 2020-04-25 29409 SARS-CoV-2/human/MEX/SEARCH-1695-TIJ/2020 Mexico/Tijuana/BajaCalifornia
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A19385C A20268G A23403G C28854T C29167T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
A1- C241T C3037T C14408T A19385C A20268G A23403G C28854T C29167T
EPI_ISL_496356 2020-04-25 29902 hCoV-19/Mexico/ALSR-1695/2020 Mexico/Baja California/Tijuana
C3037T C14408T A20268G A23403G
MT810526 2020-03-20 29409 SARS-CoV-2/human/USA/SEARCH-1660-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCT1- C241T C3037T C14408T A20268G A23403G
EPI_ISL_494721 2020-03-20 29886 hCoV-19/USA/CA-ALSR-1660/2020 United States/California/San Diego
C3037T C14408T A20268G A23403G C27509T C28854T
MT810704 2020-04-30 29409 SARS-CoV-2/human/USA/SEARCH-1280-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C27509T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G C27509T C28854T
EPI_ISL_494477 2020-04-30 29854 hCoV-19/USA/CA-ALSR-1280/2020 United States/California/San Diego
C3037T C14408T A20268G A23403G C28854T
MT810786 2020-03-25 29409 SARS-CoV-2/human/MEX/SEARCH-1712-TIJ/2020 Mexico/Tijuana/BajaCalifornia
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_496373 2020-03-25 29899 hCoV-19/Mexico/ALSR-1712/2020 Mexico/Baja California/Tijuana
MT811196 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-0493-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_483178 2020-04-02 29865 hCoV-19/USA/CA-ALSR-0493-SAN/2020 United States/California/San Diego
MT811447 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-0981-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_483440 2020-04-02 29864 hCoV-19/USA/CA-ALSR-0981-SAN/2020 United States/California/San Diego
MT810977 2020-04-08 29409 SARS-CoV-2/human/USA/SEARCH-0353-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_458239 2020-04-08 29903 hCoV-19/USA/CA-SR0353/2020 United States/California/San Diego
MT810586 2020-04-15 29409 SARS-CoV-2/human/USA/SEARCH-0473-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_483163 2020-04-15 29854 hCoV-19/USA/CA-ALSR-0473-SAN/2020 United States/California/San Diego
MT810671 2020-04-16 29409 SARS-CoV-2/human/USA/SEARCH-1219-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_494444 2020-04-16 29903 hCoV-19/USA/CA-ALSR-1219/2020 United States/California/San Diego
MT810502 2020-04-20 29409 SARS-CoV-2/human/USA/SEARCH-1425-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCT1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_494594 2020-04-20 29886 hCoV-19/USA/CA-ALSR-1425/2020 United States/California/San Diego
MT811476 2020-04-20 29409 SARS-CoV-2/human/USA/SEARCH-1023-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_483469 2020-04-20 29866 hCoV-19/USA/CA-ALSR-1023-SAN/2020 United States/California/San Diego
MT810498 2020-04-21 29409 SARS-CoV-2/human/USA/SEARCH-1416-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCT1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_494590 2020-04-21 29886 hCoV-19/USA/CA-ALSR-1416/2020 United States/California/San Diego
MT810518 2020-04-21 29409 SARS-CoV-2/human/USA/SEARCH-1512-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAA1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_494634 2020-04-21 29897 hCoV-19/USA/CA-ALSR-1512/2020 United States/California/San Diego
MT810778 2020-04-22 29409 SARS-CoV-2/human/MEX/SEARCH-1704-TIJ/2020 Mexico/Tijuana/BajaCalifornia
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_496365 2020-04-22 29899 hCoV-19/Mexico/ALSR-1704/2020 Mexico/Baja California/Tijuana
MT810780 2020-04-22 29409 SARS-CoV-2/human/MEX/SEARCH-1706-TIJ/2020 Mexico/Tijuana/BajaCalifornia
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGG1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_496367 2020-04-22 29895 hCoV-19/Mexico/ALSR-1706/2020 Mexico/Baja California/Tijuana
MT810652 2020-04-27 29409 SARS-CoV-2/human/USA/SEARCH-1189-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_494425 2020-04-27 29854 hCoV-19/USA/CA-ALSR-1189/2020 United States/California/San Diego
MT810683 2020-04-27 29409 SARS-CoV-2/human/USA/SEARCH-1247-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAA1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_494456 2020-04-27 29897 hCoV-19/USA/CA-ALSR-1247/2020 United States/California/San Diego
MT810767 2020-04-27 29409 SARS-CoV-2/human/MEX/SEARCH-1693-TIJ/2020 Mexico/Tijuana/BajaCalifornia
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_496354 2020-04-27 29864 hCoV-19/Mexico/ALSR-1693/2020 Mexico/Baja California/Tijuana
MT810609 2020-04-28 29409 SARS-CoV-2/human/USA/SEARCH-1132-SAN/2020 United States/San Diego/California
EPI_ISL_494382 2020-04-28 29903 hCoV-19/USA/CA-ALSR-1132/2020 United States/California/San Diego
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
MT810761 2020-04-28 29409 SARS-CoV-2/human/MEX/SEARCH-1479-TIJ/2020 Mexico/Tijuana/BajaCalifornia
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_496348 2020-04-28 29864 hCoV-19/Mexico/ALSR-1479/2020 Mexico/Baja California/Tijuana
MT810641 2020-04-29 29409 SARS-CoV-2/human/USA/SEARCH-1175-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_494414 2020-04-29 29865 hCoV-19/USA/CA-ALSR-1175/2020 United States/California/San Diego
MT810787 2020-04-29 29409 SARS-CoV-2/human/MEX/SEARCH-1713-TIJ/2020 Mexico/Tijuana/BajaCalifornia
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C28854T AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-
EPI_ISL_496374 2020-04-29 29760 hCoV-19/Mexico/ALSR-1713/2020 Mexico/Baja California/Tijuana
MT810991 2020-04-29 29409 SARS-CoV-2/human/USA/SEARCH-0371-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_458254 2020-04-29 29903 hCoV-19/USA/CA-SR0371/2020 United States/California/San Diego
MT811308 2020-04-29 29409 SARS-CoV-2/human/USA/SEARCH-0678-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCT1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_483295 2020-04-29 29886 hCoV-19/USA/CA-ALSR-0678-IPL/2020 United States/California/Imperial
MT810505 2020-04-30 29409 SARS-CoV-2/human/USA/SEARCH-1495-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_494621 2020-04-30 29859 hCoV-19/USA/CA-ALSR-1495/2020 United States/California/San Diego
MT810716 2020-04-30 29409 SARS-CoV-2/human/USA/SEARCH-1311-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATAC1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_494489 2020-04-30 29888 hCoV-19/USA/CA-ALSR-1311/2020 United States/California/San Diego
MT810730 2020-04-30 29409 SARS-CoV-2/human/USA/SEARCH-1340-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCT1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_494502 2020-04-30 29886 hCoV-19/USA/CA-ALSR-1340/2020 United States/California/San Diego
MT810668 2020-05-01 29409 SARS-CoV-2/human/USA/SEARCH-1211-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_494441 2020-05-01 29854 hCoV-19/USA/CA-ALSR-1211/2020 United States/California/San Diego
MT811346 2020-05-03 29409 SARS-CoV-2/human/USA/SEARCH-0753-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTT1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_483333 2020-05-03 29893 hCoV-19/USA/CA-ALSR-0753-IPL/2020 United States/California/Imperial
MT811423 2020-05-03 29409 SARS-CoV-2/human/USA/SEARCH-0925-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_483416 2020-05-03 29854 hCoV-19/USA/CA-ALSR-0925-IPL/2020 United States/California/Imperial
MT810678 2020-05-05 29409 SARS-CoV-2/human/USA/SEARCH-1229-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTT1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_494451 2020-05-05 29893 hCoV-19/USA/CA-ALSR-1229/2020 United States/California/San Diego
MT810682 2020-05-05 29409 SARS-CoV-2/human/USA/SEARCH-1242-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAA1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_494455 2020-05-05 29898 hCoV-19/USA/CA-ALSR-1242/2020 United States/California/San Diego
MT810688 2020-05-05 29409 SARS-CoV-2/human/USA/SEARCH-1260-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTT1- C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_494461 2020-05-05 29893 hCoV-19/USA/CA-ALSR-1260/2020 United States/California/San Diego
MT811227 2020-05-05 29409 SARS-CoV-2/human/USA/SEARCH-0539-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
A1- G208T C241T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_483211 2020-05-05 29902 hCoV-19/USA/CA-ALSR-0539-IPL/2020 United States/California/Imperial
C3037T C14408T A20268G A23403G C28854T C28887T
MT811456 2020-04-26 29409 SARS-CoV-2/human/USA/SEARCH-0993-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T C28887T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C28854T C28887T
EPI_ISL_483449 2020-04-26 29865 hCoV-19/USA/CA-ALSR-0993-SAN/2020 United States/California/San Diego
MT811246 2020-05-13 29409 SARS-CoV-2/human/USA/SEARCH-0570-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T C28887T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTT1- G91T C241T C3037T C14408T A20268G A23403G C28854T C28887T
EPI_ISL_483230 2020-05-13 29892 hCoV-19/USA/CA-ALSR-0570-IPL/2020 United States/California/Imperial
MT811253 2020-05-13 29409 SARS-CoV-2/human/USA/SEARCH-0581-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T C28887T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- G91T C241T C3037T C14408T A20268G A23403G C28854T C28887T
EPI_ISL_483237 2020-05-13 29899 hCoV-19/USA/CA-ALSR-0581-IPL/2020 United States/California/Imperial
C3037T C14408T A20268G A23403G G23522A C28854T
MT811294 2020-04-30 29409 SARS-CoV-2/human/USA/SEARCH-0653-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G G23522A C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
AT1- G208T C241T C3037T C14408T A20268G A23403G G23522A C28854T
EPI_ISL_483281 2020-04-30 29901 hCoV-19/USA/CA-ALSR-0653-IPL/2020 United States/California/Imperial
MT811413 2020-04-30 29409 SARS-CoV-2/human/USA/SEARCH-0903-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G G23522A C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
AT1- G208T C241T C3037T C14408T A20268G A23403G G23522A C28854T
EPI_ISL_483406 2020-04-30 29901 hCoV-19/USA/CA-ALSR-0903-IPL/2020 United States/California/Imperial
C3037T C14408T A20268G A23403G G24095T C28854T
MT810856 2020-05-11 29409 SARS-CoV-2/human/USA/SEARCH-1546-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G G24095T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G G24095T C28854T
EPI_ISL_494655 2020-05-11 29854 hCoV-19/USA/CA-ALSR-1546/2020 United States/California/San Diego
C3037T C14408T A20268G A23403G G24794T C28313G C28854T
MT811251 2020-05-13 29409 SARS-CoV-2/human/USA/SEARCH-0579-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G G24794T C28313G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G G24794T C28313G C28854T
EPI_ISL_483235 2020-05-13 29864 hCoV-19/USA/CA-ALSR-0579-SAN/2020 United States/California/San Diego
C3037T C14408T A20268G A23403G G25396T C28854T
MT810721 2020-04-30 29409 SARS-CoV-2/human/USA/SEARCH-1322-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G G25396T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G G25396T C28854T
EPI_ISL_494493 2020-04-30 29854 hCoV-19/USA/CA-ALSR-1322/2020 United States/California/San Diego
MT810722 2020-04-30 29409 SARS-CoV-2/human/USA/SEARCH-1324-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G G25396T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G G25396T C28854T
EPI_ISL_494494 2020-04-30 29854 hCoV-19/USA/CA-ALSR-1324/2020 United States/California/San Diego
C3037T C14408T A20268G A23403G T24076C C27630T C28854T
MT810519 2020-03-23 29409 SARS-CoV-2/human/USA/SEARCH-1649-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C27630T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
AT1- C241T C3037T C14408T A20268G A23403G T24076C C27630T C28854T
EPI_ISL_494714 2020-03-23 29901 hCoV-19/USA/CA-ALSR-1649/2020 United States/California/San Diego
MT810555 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0419-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C27630T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C14408T A20268G A23403G T24076C C27630T C28854T
EPI_ISL_467953 2020-03-30 29903 hCoV-19/USA/CA-SR0419/2020 United States/California/San Diego
MT811364 2020-04-08 29409 SARS-CoV-2/human/USA/SEARCH-0778-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C27630T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTT1- C241T C3037T C14408T A20268G A23403G T24076C C27630T C28854T
EPI_ISL_483352 2020-04-08 29893 hCoV-19/USA/CA-ALSR-0778-IPL/2020 United States/California/Imperial
MT811358 2020-04-12 29409 SARS-CoV-2/human/USA/SEARCH-0767-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C27630T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T24076C C27630T C28854T
EPI_ISL_483346 2020-04-12 29849 hCoV-19/USA/CA-ALSR-0767-IPL/2020 United States/California/Imperial
C3037T C14408T A20268G A23403G T24076C C28854T
MT811318 2020-03-27 29409 SARS-CoV-2/human/USA/SEARCH-0690-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_483305 2020-03-27 29864 hCoV-19/USA/CA-ALSR-0690-SAN/2020 United States/California/San Diego
MT810673 2020-04-13 29409 SARS-CoV-2/human/USA/SEARCH-1222-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_494446 2020-04-13 29852 hCoV-19/USA/CA-ALSR-1222/2020 United States/California/San Diego
MT810509 2020-04-20 29409 SARS-CoV-2/human/USA/SEARCH-1502-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_494625 2020-04-20 29865 hCoV-19/USA/CA-ALSR-1502/2020 United States/California/San Diego
MT811265 2020-04-20 29409 SARS-CoV-2/human/USA/SEARCH-0607-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_483252 2020-04-20 29864 hCoV-19/USA/CA-ALSR-0607-IPL/2020 United States/California/Imperial
MT811481 2020-04-20 29409 SARS-CoV-2/human/USA/SEARCH-1032-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_483474 2020-04-20 29864 hCoV-19/USA/CA-ALSR-1032-IPL/2020 United States/California/Imperial
MT810874 2020-04-23 29409 SARS-CoV-2/human/USA/SEARCH-1585-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_494673 2020-04-23 29854 hCoV-19/USA/CA-ALSR-1585/2020 United States/California/San Diego
MT811290 2020-04-23 29409 SARS-CoV-2/human/USA/SEARCH-0645-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACC1- C241T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_483277 2020-04-23 29887 hCoV-19/USA/CA-ALSR-0645-IPL/2020 United States/California/Imperial
MT811459 2020-04-23 29409 SARS-CoV-2/human/USA/SEARCH-0998-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_483452 2020-04-23 29864 hCoV-19/USA/CA-ALSR-0998-IPL/2020 United States/California/Imperial
MT811474 2020-04-23 29409 SARS-CoV-2/human/USA/SEARCH-1021-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_483467 2020-04-23 29899 hCoV-19/USA/CA-ALSR-1021-IPL/2020 United States/California/Imperial
MT811300 2020-04-30 29409 SARS-CoV-2/human/USA/SEARCH-0662-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_483287 2020-04-30 29858 hCoV-19/USA/CA-ALSR-0662-IPL/2020 United States/California/Imperial
MT810709 2020-05-01 29409 SARS-CoV-2/human/USA/SEARCH-1289-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_494482 2020-05-01 29854 hCoV-19/USA/CA-ALSR-1289/2020 United States/California/Imperial
MT810852 2020-05-01 29409 SARS-CoV-2/human/USA/SEARCH-1538-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_494651 2020-05-01 29873 hCoV-19/USA/CA-ALSR-1538/2020 United States/California/San Diego
MT811238 2020-05-11 29409 SARS-CoV-2/human/USA/SEARCH-0558-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_483222 2020-05-11 29903 hCoV-19/USA/CA-ALSR-0558-IPL/2020 United States/California/Imperial
MT811245 2020-05-13 29409 SARS-CoV-2/human/USA/SEARCH-0568-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACC1- C241T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_483229 2020-05-13 29887 hCoV-19/USA/CA-ALSR-0568-SAN/2020 United States/California/San Diego
MT811350 2020-05-13 29409 SARS-CoV-2/human/USA/SEARCH-0757-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_483337 2020-05-13 29903 hCoV-19/USA/CA-ALSR-0757-IPL/2020 United States/California/Imperial
C3037T C14408T A20268G A23403G T24076C C28854T C29077T
MT810697 2020-05-08 29409 SARS-CoV-2/human/USA/SEARCH-1272-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T C29077T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C14408T A20268G A23403G T24076C C28854T C29077T
EPI_ISL_494470 2020-05-08 29903 hCoV-19/USA/CA-ALSR-1272/2020 United States/California/San Diego
C3037T C14408T A20268G A23403G T24076C C28854T G29140T
MT810718 2020-04-30 29409 SARS-CoV-2/human/USA/SEARCH-1315-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T G29140T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G T24076C C28854T G29140T
EPI_ISL_494491 2020-04-30 29856 hCoV-19/USA/CA-ALSR-1315/2020 United States/California/San Diego
C3037T C14408T A20268G A23403G T24076C T27212A C28854T
MT811295 2020-04-17 29409 SARS-CoV-2/human/USA/SEARCH-0657-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C T27212A C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C14408T A20268G A23403G T24076C T27212A C28854T
EPI_ISL_483282 2020-04-17 29903 hCoV-19/USA/CA-ALSR-0657-IPL/2020 United States/California/Imperial
C3037T C14408T A20268G C21260T A23403G G24399T C27883T C28603T C28854T
MT810764 2020-04-28 29409 SARS-CoV-2/human/MEX/SEARCH-1690-TIJ/2020 Mexico/Tijuana/BajaCalifornia
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G C21260T A23403G G24399T C27883T C28603T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G C21260T A23403G G24399T C27883T C28603T C28854T
EPI_ISL_496351 2020-04-28 29856 hCoV-19/Mexico/ALSR-1690/2020 Mexico/Baja California/Tijuana
C3037T C14408T A20268G C21621T A23403G G23793T G25785T C28854T
MT811420 2020-04-27 29409 SARS-CoV-2/human/USA/SEARCH-0918-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G C21621T A23403G G23793T G25785T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G C21621T A23403G G23793T G25785T C28854T
EPI_ISL_483413 2020-04-27 29856 hCoV-19/USA/CA-ALSR-0918-IPL/2020 United States/California/Imperial
MT811424 2020-04-27 29409 SARS-CoV-2/human/USA/SEARCH-0926-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G C21621T A23403G G23793T G25785T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACC1- C241T C3037T C14408T A20268G C21621T A23403G G23793T G25785T C28854T
EPI_ISL_483417 2020-04-27 29887 hCoV-19/USA/CA-ALSR-0926-IPL/2020 United States/California/Imperial
MT811421 2020-04-29 29409 SARS-CoV-2/human/USA/SEARCH-0921-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G C21621T A23403G G23793T G25785T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T A20268G C21621T A23403G G23793T G25785T C28854T
EPI_ISL_483414 2020-04-29 29884 hCoV-19/USA/CA-ALSR-0921-IPL/2020 United States/California/Imperial
C3037T C14408T A20268G C22208T A23403G C28854T
MT810772 2020-04-22 29409 SARS-CoV-2/human/MEX/SEARCH-1698-TIJ/2020 Mexico/Tijuana/BajaCalifornia
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G C22208T A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G C22208T A23403G C28854T
EPI_ISL_496359 2020-04-22 29854 hCoV-19/Mexico/ALSR-1698/2020 Mexico/Baja California/Tijuana
C3037T C14408T A20268G G21255C A23403G C28854T
MT811269 2020-04-18 29409 SARS-CoV-2/human/USA/SEARCH-0611-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A20268G G21255C A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G G21255C A23403G C28854T
EPI_ISL_483256 2020-04-18 29864 hCoV-19/USA/CA-ALSR-0611-SAN/2020 United States/California/San Diego
C3037T C14408T A21137G A23403G A26530G
MT810971 2020-03-22 29409 SARS-CoV-2/human/USA/SEARCH-0312-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A21137G A23403G A26530G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C14408T A21137G A23403G A26530G
EPI_ISL_445166 2020-03-22 29903 hCoV-19/USA/CA-SR0312/2020 United States/California/San Diego
C3037T C14408T A23403G
MT810481 2020-03-12 29409 SARS-CoV-2/human/USA/SEARCH-1382-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A23403G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G
EPI_ISL_494573 2020-03-12 29854 hCoV-19/USA/CA-ALSR-1382/2020 United States/California/San Diego
C3037T C14408T A23403G C23638T T26960C GGG28881AAC
MT810611 2020-04-27 29409 SARS-CoV-2/human/USA/SEARCH-1138-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A23403G C23638T T26960C GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGT1- C241T C3037T C14408T A23403G C23638T T26960C GGG28881AAC
EPI_ISL_494384 2020-04-27 29894 hCoV-19/USA/CA-ALSR-1138/2020 United States/California/San Diego
C3037T C14408T A23403G C24374T C25350T C27503T
MT810575 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0452-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A23403G C24374T C25350T C27503T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C14408T A23403G C24374T C25350T C27503T
EPI_ISL_467975 2020-03-30 29903 hCoV-19/USA/CA-SR0452/2020 United States/California/San Diego
C3037T C14408T A23403G C25350T C25566T
MT810513 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-1506-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C14408T A23403G C25350T C25566T
EPI_ISL_494629 2020-04-02 29903 hCoV-19/USA/CA-ALSR-1506/2020 United States/California
MT810535 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-1670-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAA1- C241T C3037T C14408T A23403G C25350T C25566T
EPI_ISL_494730 2020-04-02 29897 hCoV-19/USA/CA-ALSR-1670/2020 United States/California/San Diego
MT810612 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-1140-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATT1- C241T C3037T C14408T A23403G C25350T C25566T
EPI_ISL_494385 2020-04-02 29900 hCoV-19/USA/CA-ALSR-1140/2020 United States/California
MT810621 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-1151-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G C25350T C25566T
EPI_ISL_494394 2020-04-02 29864 hCoV-19/USA/CA-ALSR-1151/2020 United States/California
MT810636 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-1167-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C14408T A23403G C25350T C25566T
EPI_ISL_494409 2020-04-02 29903 hCoV-19/USA/CA-ALSR-1167/2020 United States/California
MT810644 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-1181-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G C25350T C25566T
EPI_ISL_494417 2020-04-02 29854 hCoV-19/USA/CA-ALSR-1181/2020 United States/California
MT810645 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-1182-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTA1- C241T C3037T C14408T A23403G C25350T C25566T
EPI_ISL_494418 2020-04-02 29891 hCoV-19/USA/CA-ALSR-1182/2020 United States/California
MT810605 2020-04-03 29409 SARS-CoV-2/human/USA/SEARCH-1126-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G C25350T C25566T
EPI_ISL_494378 2020-04-03 29856 hCoV-19/USA/CA-ALSR-1126/2020 United States/California
MT810643 2020-04-04 29409 SARS-CoV-2/human/USA/SEARCH-1180-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
AT1- C241T C3037T C14408T A23403G C25350T C25566T
EPI_ISL_494416 2020-04-04 29901 hCoV-19/USA/CA-ALSR-1180/2020 United States/California
MT810631 2020-04-05 29409 SARS-CoV-2/human/USA/SEARCH-1161-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGT1- C241T C3037T C14408T A23403G C25350T C25566T
EPI_ISL_494404 2020-04-05 29894 hCoV-19/USA/CA-ALSR-1161/2020 United States/California
MT810632 2020-04-05 29409 SARS-CoV-2/human/USA/SEARCH-1162-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C14408T A23403G C25350T C25566T
EPI_ISL_494405 2020-04-05 29877 hCoV-19/USA/CA-ALSR-1162/2020 United States/California
MT810633 2020-04-05 29409 SARS-CoV-2/human/USA/SEARCH-1164-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G C25350T C25566T
EPI_ISL_494406 2020-04-05 29866 hCoV-19/USA/CA-ALSR-1164/2020 United States/California/San Diego
MT810607 2020-04-08 29409 SARS-CoV-2/human/USA/SEARCH-1129-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C14408T A23403G C25350T C25566T
EPI_ISL_494380 2020-04-08 29903 hCoV-19/USA/CA-ALSR-1129/2020 United States/California
MT810617 2020-04-08 29409 SARS-CoV-2/human/USA/SEARCH-1145-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C14408T A23403G C25350T C25566T
EPI_ISL_494390 2020-04-08 29903 hCoV-19/USA/CA-ALSR-1145/2020 United States/California
MT810618 2020-04-08 29409 SARS-CoV-2/human/USA/SEARCH-1146-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A23403G C25350T C25566T
EPI_ISL_494391 2020-04-08 29858 hCoV-19/USA/CA-ALSR-1146/2020 United States/California
C3037T C14408T A23403G C25517T C27849T GGG28881AAC
MT811010 2020-04-08 29409 SARS-CoV-2/human/USA/SEARCH-0402-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A23403G C25517T C27849T GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C14408T A23403G C25517T C27849T GGG28881AAC
EPI_ISL_458274 2020-04-08 29903 hCoV-19/USA/CA-SR0402/2020 United States/California/San Diego
C3037T C14408T A23403G GGG28881AAC
MT810997 2020-04-03 29409 SARS-CoV-2/human/USA/SEARCH-0381-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A23403G GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C14408T A23403G GGG28881AAC
EPI_ISL_458261 2020-04-03 29903 hCoV-19/USA/CA-SR0381/2020 United States/California/San Diego
MT810584 2020-04-10 29409 SARS-CoV-2/human/USA/SEARCH-0470-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A23403G GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G GGG28881AAC
EPI_ISL_483161 2020-04-10 29856 hCoV-19/USA/CA-ALSR-0470-SAN/2020 United States/California/San Diego
MT810983 2020-04-15 29409 SARS-CoV-2/human/USA/SEARCH-0362-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A23403G GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C222T C241T C3037T C14408T A23403G GGG28881AAC
EPI_ISL_458246 2020-04-15 29903 hCoV-19/USA/CA-SR0362/2020 United States/California/San Diego
C3037T C14408T A23403G T26960C GGG28881AAC
MT811261 2020-04-15 29409 SARS-CoV-2/human/USA/SEARCH-0593-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T A23403G T26960C GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACC1- C241T C3037T C14408T A23403G T26960C GGG28881AAC
EPI_ISL_483247 2020-04-15 29887 hCoV-19/USA/CA-ALSR-0593-SAN/2020 United States/California/San Diego
C3037T C14408T C14821A C18060A A20268G A23403G C28854T G29374T
MT811503 2020-06-15 29409 SARS-CoV-2/human/USA/SEARCH-1068-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T C14821A C18060A A20268G A23403G C28854T G29374T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
AT1- C241T C3037T C14408T C14821A C18060A A20268G A23403G C28854T G29374T
EPI_ISL_483498 2020-06-15 29901 hCoV-19/USA/CA-ALSR-1068-SAN/2020 United States/California/San Diego
C3037T C14408T C14821A C18060A G18907T A20268G C21662T C21711T A23403G C28854T G29374T
MT811488 2020-06-21 29409 SARS-CoV-2/human/USA/SEARCH-1045-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T C14821A C18060A G18907T A20268G C21662T C21711T A23403G C28854T G29374T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C14821A C18060A G18907T A20268G C21662T C21711T A23403G C28854T G29374T
EPI_ISL_483481 2020-06-21 29864 hCoV-19/USA/CA-ALSR-1045-SAN/2020 United States/California/San Diego
C3037T C14408T C15240T C18486T A20268G T22162C A23403G C28854T
MT811516 2020-06-23 29409 SARS-CoV-2/human/USA/SEARCH-1084-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T C15240T C18486T A20268G T22162C A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15240T C18486T A20268G T22162C A23403G C28854T
EPI_ISL_483511 2020-06-23 29864 hCoV-19/USA/CA-ALSR-1084-SAN/2020 United States/California/San Diego
C3037T C14408T C17747T A23403G C25350T
MT810646 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-1183-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T C17747T A23403G C25350T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTT1- C241T C3037T C14408T C17747T A23403G C25350T
EPI_ISL_494419 2020-04-02 29893 hCoV-19/USA/CA-ALSR-1183/2020 United States/California
C3037T C14408T C18486T A20268G T22162C A23403G C28854T
MT810596 2020-06-18 29409 SARS-CoV-2/human/USA/SEARCH-1116-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T C18486T A20268G T22162C A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C28854T
EPI_ISL_483539 2020-06-18 29899 hCoV-19/USA/CA-ALSR-1116-SAN/2020 United States/California/San Diego
C3037T C14408T C18814T TTTGGGTGTTTA21982- A23403G
MT810923 2020-03-25 29397 SARS-CoV-2/human/USA/SEARCH-0187-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T C18814T TTTGGGTGTTTA21982- A23403G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C14408T C18814T TTTGGGTGTTTA21982- A23403G
EPI_ISL_437593 2020-03-25 29891 hCoV-19/USA/CA-SR0187/2020 United States/California/San Diego
C3037T C14408T C18877T A23403G G25563T
MT810521 2020-03-25 29409 SARS-CoV-2/human/USA/SEARCH-1651-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAA1- C241T C3037T C14408T C18877T A23403G G25563T
EPI_ISL_494716 2020-03-25 29897 hCoV-19/USA/CA-ALSR-1651/2020 United States/California/San Diego
MT810545 2020-03-25 29409 SARS-CoV-2/human/USA/SEARCH-1682-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C3037T C14408T C18877T A23403G G25563T
EPI_ISL_494740 2020-03-25 29899 hCoV-19/USA/CA-ALSR-1682/2020 United States/California/San Diego
MT810548 2020-03-25 29409 SARS-CoV-2/human/USA/SEARCH-1685-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAG1- C241T C3037T C14408T C18877T A23403G G25563T
EPI_ISL_494743 2020-03-25 29896 hCoV-19/USA/CA-ALSR-1685/2020 United States/California/San Diego
MT810833 2020-03-27 29409 SARS-CoV-2/human/USA/SEARCH-1456-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C3037T C14408T C18877T A23403G G25563T
EPI_ISL_494615 2020-03-27 29899 hCoV-19/USA/CA-ALSR-1456/2020 United States/California/San Diego
MT810822 2020-03-28 29409 SARS-CoV-2/human/USA/SEARCH-1441-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C3037T C14408T C18877T A23403G G25563T
EPI_ISL_494604 2020-03-28 29899 hCoV-19/USA/CA-ALSR-1441/2020 United States/California/San Diego
MT810978 2020-04-03 29409 SARS-CoV-2/human/USA/SEARCH-0355-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C14408T C18877T A23403G G25563T
EPI_ISL_458240 2020-04-03 29903 hCoV-19/USA/CA-SR0355/2020 United States/California/San Diego
MT810876 2020-04-27 29409 SARS-CoV-2/human/USA/SEARCH-1587-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAA1- C241T C3037T C14408T C18877T A23403G G25563T
EPI_ISL_494675 2020-04-27 29898 hCoV-19/USA/CA-ALSR-1587/2020 United States/California/San Diego
MT810651 2020-04-28 29409 SARS-CoV-2/human/USA/SEARCH-1188-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C14408T C18877T A23403G G25563T
EPI_ISL_494424 2020-04-28 29903 hCoV-19/USA/CA-ALSR-1188/2020 United States/California/San Diego
C3037T C14408T C18877T A23403G G25563T C26735T C27923T
MT811568 2020-04-08 29409 SARS-CoV-2/human/JOR/SEARCH-0335-JOR/2020 Jordan/Amman
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T C26735T C27923T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C14408T C18877T A23403G G25563T C26735T C27923T
EPI_ISL_450187 2020-04-08 29903 hCoV-19/Jordan/SR-0335/2020 Jordan/Amman
C3037T C14408T G15732T T19143C A20268G A23403G
MT811333 2020-03-28 29409 SARS-CoV-2/human/USA/SEARCH-0715-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T G15732T T19143C A20268G A23403G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C14408T G15732T T19143C A20268G A23403G
EPI_ISL_483320 2020-03-28 29861 hCoV-19/USA/CA-ALSR-0715-SAN/2020 United States/California/San Diego
C3037T C14408T G16741A A20268G A23403G C28854T
MT811303 2020-05-01 29409 SARS-CoV-2/human/USA/SEARCH-0668-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T G16741A A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTT1- C241T C3037T C14408T G16741A A20268G A23403G C28854T
EPI_ISL_483290 2020-05-01 29892 hCoV-19/USA/CA-ALSR-0668-SAN/2020 United States/California/San Diego
MT811430 2020-05-01 29409 SARS-CoV-2/human/USA/SEARCH-0934-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T G16741A A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C14408T G16741A A20268G A23403G C28854T
EPI_ISL_483423 2020-05-01 29861 hCoV-19/USA/CA-ALSR-0934-SAN/2020 United States/California/San Diego
C3037T C14408T G16853T A23403G T26960C GGG28881AAC
MT811016 2020-04-21 29409 SARS-CoV-2/human/USA/SEARCH-0410-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T G16853T A23403G T26960C GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C14408T G16853T A23403G T26960C GGG28881AAC
EPI_ISL_458280 2020-04-21 29903 hCoV-19/USA/CA-SR0410/2020 United States/California/San Diego
C3037T C14408T G16957T C19151T A20268G C22858T A23403G T25870C C28854T
MT811464 2020-04-19 29409 SARS-CoV-2/human/USA/SEARCH-1003-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T G16957T C19151T A20268G C22858T A23403G T25870C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGG1- C241T C3037T C14408T G16957T C19151T A20268G C22858T A23403G T25870C C28854T
EPI_ISL_483457 2020-04-19 29895 hCoV-19/USA/CA-ALSR-1003-SAN/2020 United States/California/San Diego
C3037T C14408T G17302T C18559T A20268G A23403G C26681T C28854T
MT810680 2020-05-05 29409 SARS-CoV-2/human/USA/SEARCH-1239-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T G17302T C18559T A20268G A23403G C26681T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G17302T C18559T A20268G A23403G C26681T C28854T
EPI_ISL_494453 2020-05-05 29865 hCoV-19/USA/CA-ALSR-1239/2020 United States/California/San Diego
C3037T C14408T G17972T A20268G A23403G C28854T
MT810884 2020-04-22 29409 SARS-CoV-2/human/USA/SEARCH-1597-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T G17972T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T G17972T A20268G A23403G C28854T
EPI_ISL_494683 2020-04-22 29875 hCoV-19/USA/CA-ALSR-1597/2020 United States/California/San Diego
C3037T C14408T G21255C A23403G GGG28881AAC G28960T
MT811288 2020-04-23 29409 SARS-CoV-2/human/USA/SEARCH-0642-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T G21255C A23403G GGG28881AAC G28960T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C14408T G21255C A23403G GGG28881AAC G28960T
EPI_ISL_483275 2020-04-23 29903 hCoV-19/USA/CA-ALSR-0642-SAN/2020 United States/California/San Diego
C3037T C14408T T14910C A16052G A20268G A23403G T24076C GG25690TT C28854T
MT811520 2020-06-16 29409 SARS-CoV-2/human/USA/SEARCH-1088-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T T14910C A16052G A20268G A23403G T24076C GG25690TT C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T T14910C A16052G A20268G A23403G T24076C GG25690TT C28854T
EPI_ISL_483515 2020-06-16 29864 hCoV-19/USA/CA-ALSR-1088-SAN/2020 United States/California/San Diego
C3037T C14408T T15606C G16475A A20268G A23403G C28854T
MT811411 2020-05-01 29409 SARS-CoV-2/human/USA/SEARCH-0901-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T T15606C G16475A A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T T15606C G16475A A20268G A23403G C28854T
EPI_ISL_483404 2020-05-01 29864 hCoV-19/USA/CA-ALSR-0901-SAN/2020 United States/California/San Diego
C3037T C14408T T15606C G16475A A20268G A23403G G24095T C28854T
MT810903 2020-04-27 29409 SARS-CoV-2/human/USA/SEARCH-1632-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T T15606C G16475A A20268G A23403G G24095T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C3037T C14408T T15606C G16475A A20268G A23403G G24095T C28854T
EPI_ISL_494702 2020-04-27 29899 hCoV-19/USA/CA-ALSR-1632/2020 United States/California/San Diego
C3037T C14408T T15817C A23403G GGG28881AAC
MT811267 2020-04-19 29409 SARS-CoV-2/human/USA/SEARCH-0609-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T T15817C A23403G GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTT1- C222T C241T C3037T C14408T T15817C A23403G GGG28881AAC
EPI_ISL_483254 2020-04-19 29893 hCoV-19/USA/CA-ALSR-0609-SAN/2020 United States/California/San Diego
MT811467 2020-04-19 29409 SARS-CoV-2/human/USA/SEARCH-1012-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T T15817C A23403G GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGG1- C222T C241T C3037T C14408T T15817C A23403G GGG28881AAC
EPI_ISL_483460 2020-04-19 29895 hCoV-19/USA/CA-ALSR-1012-SAN/2020 United States/California/San Diego
MT810602 2020-04-28 29409 SARS-CoV-2/human/USA/SEARCH-1123-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T T15817C A23403G GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C222T C241T C3037T C14408T T15817C A23403G GGG28881AAC
EPI_ISL_494375 2020-04-28 29864 hCoV-19/USA/CA-ALSR-1123/2020 United States/California/San Diego
C3037T C14408T T17928C A20268G C22000T A23403G C28854T
MT810771 2020-04-24 29409 SARS-CoV-2/human/MEX/SEARCH-1697-TIJ/2020 Mexico/Tijuana/BajaCalifornia
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T T17928C A20268G C22000T A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C14408T T17928C A20268G C22000T A23403G C28854T
EPI_ISL_496358 2020-04-24 29861 hCoV-19/Mexico/ALSR-1697/2020 Mexico/Baja California/Tijuana
C3037T C14408T T19315C A20268G T21951C A23403G T24076C C28854T
MT811266 2020-04-20 29409 SARS-CoV-2/human/USA/SEARCH-0608-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T T19315C A20268G T21951C A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T T19315C A20268G T21951C A23403G T24076C C28854T
EPI_ISL_483253 2020-04-20 29864 hCoV-19/USA/CA-ALSR-0608-IPL/2020 United States/California/Imperial
C3037T C14408T T19839C A23403G A23756G GGG28881AAC
MT810699 2020-05-05 29409 SARS-CoV-2/human/USA/SEARCH-1274-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T T19839C A23403G A23756G GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T T19839C A23403G A23756G GGG28881AAC
EPI_ISL_494472 2020-05-05 29858 hCoV-19/USA/CA-ALSR-1274/2020 United States/California/San Diego
C3037T C14408T T20256C A20268G C20428T A23403G C28854T
MT810089 2020-05-19 29409 SARS-CoV-2/human/USA/SEARCH-0463-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C14408T T20256C A20268G C20428T A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C14408T T20256C A20268G C20428T A23403G C28854T
EPI_ISL_467984 2020-05-19 29903 hCoV-19/USA/CA-SR0463/2020 United States/California/San Diego
C3037T C3369T C10626T G11743T C14408T C18657T C20825T A22105T A23403G G25166C C25528T C25603T GGG28881AAC
MT811530 2020-06-17 29409 SARS-CoV-2/human/USA/SEARCH-1098-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C3369T C10626T G11743T C14408T C18657T C20825T A22105T A23403G G25166C C25528T C25603T GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3369T C10626T G11743T C14408T C18657T C20825T A22105T A23403G G25166C C25528T C25603T GGG28881AAC
EPI_ISL_483525 2020-06-17 29865 hCoV-19/USA/CA-ALSR-1098-SAN/2020 United States/California/San Diego
C3037T C3551T C14408T A20268G A23403G T24076C C28854T
MT811244 2020-05-12 29409 SARS-CoV-2/human/USA/SEARCH-0567-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C3551T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTA1- C241T C3037T C3551T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_483228 2020-05-12 29891 hCoV-19/USA/CA-ALSR-0567-IPL/2020 United States/California/Imperial
C3037T C3619T C9438T C14408T A20268G A23403G C28854T
MT810658 2020-04-24 29409 SARS-CoV-2/human/USA/SEARCH-1197-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C3619T C9438T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C3619T C9438T C14408T A20268G A23403G C28854T
EPI_ISL_494431 2020-04-24 29864 hCoV-19/USA/CA-ALSR-1197/2020 United States/California/San Diego
C3037T C3987T G11335T C14408T G15226A G16197T C18877T G21220T A23403G G25049T G25563T C26735T C28961T G29511A
MT811507 2020-06-23 29409 SARS-CoV-2/human/USA/SEARCH-1075-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C3987T G11335T C14408T G15226A G16197T C18877T G21220T A23403G G25049T G25563T C26735T C28961T G29511A CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAA1- C241T C3037T C3987T G11335T C14408T G15226A G16197T C18877T G21220T A23403G G25049T G25563T C26735T C28961T G29511A
EPI_ISL_483502 2020-06-23 29898 hCoV-19/USA/CA-ALSR-1075-SAN/2020 United States/California/San Diego
C3037T C4021T C6781T C6927T C11916T C13133T C14408T G16935T C19185T A23403G C26900T T27900A GGG28881AAC
MT811528 2020-06-18 29409 SARS-CoV-2/human/USA/SEARCH-1096-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4021T C6781T C6927T C11916T C13133T C14408T G16935T C19185T A23403G C26900T T27900A GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACC1- C241T C3037T C4021T C6781T C6927T C11916T C13133T C14408T G16935T C19185T A23403G C26900T T27900A GGG28881AAC
EPI_ISL_483523 2020-06-18 29887 hCoV-19/USA/CA-ALSR-1096-SAN/2020 United States/California/San Diego
C3037T C4320T C14408T A20268G A23403G C28854T
MT810984 2020-04-14 29409 SARS-CoV-2/human/USA/SEARCH-0364-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4320T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C4320T C14408T A20268G A23403G C28854T
EPI_ISL_458247 2020-04-14 29903 hCoV-19/USA/CA-SR0364/2020 United States/California/San Diego
C3037T C4321T C5672T C12854T C14408T A20268G A23403G C28854T
MT811221 2020-04-29 29409 SARS-CoV-2/human/USA/SEARCH-0531-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4321T C5672T C12854T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTAT1- C241T C3037T C4321T C5672T C12854T C14408T A20268G A23403G C28854T
EPI_ISL_483205 2020-04-29 29890 hCoV-19/USA/CA-ALSR-0531-SAN/2020 United States/California/San Diego
MT811226 2020-04-29 29409 SARS-CoV-2/human/USA/SEARCH-0538-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4321T C5672T C12854T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGG1- C241T C3037T C4321T C5672T C12854T C14408T A20268G A23403G C28854T
EPI_ISL_483210 2020-04-29 29895 hCoV-19/USA/CA-ALSR-0538-SAN/2020 United States/California/San Diego
MT811343 2020-04-29 29409 SARS-CoV-2/human/USA/SEARCH-0732-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4321T C5672T C12854T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACC1- C241T C3037T C4321T C5672T C12854T C14408T A20268G A23403G C28854T
EPI_ISL_483330 2020-04-29 29887 hCoV-19/USA/CA-ALSR-0732-SAN/2020 United States/California/San Diego
C3037T C4321T C5672T C12854T C14408T A20268G A23403G C28854T G28986T C29546T
MT811240 2020-04-29 29409 SARS-CoV-2/human/USA/SEARCH-0562-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4321T C5672T C12854T C14408T A20268G A23403G C28854T G28986T C29546T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4321T C5672T C12854T C14408T A20268G A23403G C28854T G28986T C29546T
EPI_ISL_483224 2020-04-29 29849 hCoV-19/USA/CA-ALSR-0562-SAN/2020 United States/California/San Diego
C3037T C4423T C14408T A19508C A20268G A23403G C28854T
MT810768 2020-04-27 29409 SARS-CoV-2/human/MEX/SEARCH-1694-TIJ/2020 Mexico/Tijuana/BajaCalifornia
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4423T C14408T A19508C A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C4423T C14408T A19508C A20268G A23403G C28854T
EPI_ISL_496355 2020-04-27 29864 hCoV-19/Mexico/ALSR-1694/2020 Mexico/Baja California/Tijuana
C3037T C4455T C7768T C11575T C14408T A20268G A23403G C28854T
MT810902 2020-04-27 29409 SARS-CoV-2/human/USA/SEARCH-1631-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4455T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C4455T C7768T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_494701 2020-04-27 29864 hCoV-19/USA/CA-ALSR-1631/2020 United States/California/San Diego
C3037T C4475T C14408T A20268G A23403G C28854T A29350G
MT810895 2020-05-18 29409 SARS-CoV-2/human/USA/SEARCH-1623-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4475T C14408T A20268G A23403G C28854T A29350G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTT1- C241T C3037T C4475T C14408T A20268G A23403G C28854T A29350G
EPI_ISL_494694 2020-05-18 29892 hCoV-19/USA/CA-ALSR-1623/2020 United States/California/San Diego
C3037T C4540T G4904T G5206T A6659G C14408T A23403G C24138T C25350T
MT810634 2020-04-05 29409 SARS-CoV-2/human/USA/SEARCH-1165-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4540T G4904T G5206T A6659G C14408T A23403G C24138T C25350T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCT1- C241T C3037T C4540T G4904T G5206T A6659G C14408T A23403G C24138T C25350T
EPI_ISL_494407 2020-04-05 29886 hCoV-19/USA/CA-ALSR-1165/2020 United States/California/San Diego
C3037T C4540T G4904T G5206T C14408T A19073G A23403G C24138T C25350T G28179T
MT810601 2020-04-03 29409 SARS-CoV-2/human/USA/SEARCH-1121-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A19073G A23403G C24138T C25350T G28179T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C4540T G4904T G5206T C14408T A19073G A23403G C24138T C25350T G28179T
EPI_ISL_494374 2020-04-03 29854 hCoV-19/USA/CA-ALSR-1121/2020 United States/California
C3037T C4540T G4904T G5206T C14408T A23403G C24138T C24384T C25350T
MT810578 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0457-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C24384T C25350T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C24384T C25350T
EPI_ISL_467979 2020-03-30 29903 hCoV-19/USA/CA-SR0457/2020 United States/California/San Diego
C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T
MT810572 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0447-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T
EPI_ISL_467971 2020-03-30 29903 hCoV-19/USA/CA-SR0447/2020 United States/California/San Diego
MT810581 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0461-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T
EPI_ISL_467983 2020-03-30 29903 hCoV-19/USA/CA-SR0461/2020 United States/California/San Diego
MT811388 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0813-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T
EPI_ISL_483376 2020-03-31 29853 hCoV-19/USA/CA-ALSR-0813-SAN/2020 United States/California/San Diego
MT810511 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-1504-CS1/2020 United States/Cruise_Ship_1/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T
EPI_ISL_494627 2020-04-02 29899 hCoV-19/USA/CA-ALSR-1504/2020 United States/California
MT810514 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-1508-CS1/2020 United States/Cruise_Ship_1/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T
EPI_ISL_494630 2020-04-02 29858 hCoV-19/USA/CA-ALSR-1508/2020 United States/California
MT810516 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-1510-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTT1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T
EPI_ISL_494632 2020-04-02 29892 hCoV-19/USA/CA-ALSR-1510/2020 United States/California
MT810579 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-0458-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T
EPI_ISL_467980 2020-04-02 29903 hCoV-19/USA/CA-SR0458/2020 United States/California/San Diego
MT810648 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-1185-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAA1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T
EPI_ISL_494421 2020-04-02 29898 hCoV-19/USA/CA-ALSR-1185/2020 United States/California
MT810654 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-1191-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T
EPI_ISL_494427 2020-04-02 29856 hCoV-19/USA/CA-ALSR-1191/2020 United States/California
MT810600 2020-04-03 29409 SARS-CoV-2/human/USA/SEARCH-1120-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T
EPI_ISL_494373 2020-04-03 29854 hCoV-19/USA/CA-ALSR-1120/2020 United States/California
MT810629 2020-04-04 29409 SARS-CoV-2/human/USA/SEARCH-1159-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T
EPI_ISL_494402 2020-04-04 29899 hCoV-19/USA/CA-ALSR-1159/2020 United States/California
C3037T C4540T G4904T G5206T C14408T C17172T A23403G C24138T C25350T
MT810606 2020-04-03 29409 SARS-CoV-2/human/USA/SEARCH-1127-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T C17172T A23403G C24138T C25350T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGT1- C241T C3037T C4540T G4904T G5206T C14408T C17172T A23403G C24138T C25350T
EPI_ISL_494379 2020-04-03 29894 hCoV-19/USA/CA-ALSR-1127/2020 United States/California
C3037T C4540T G4904T G5206T C5784T C14408T A23403G C24138T C25350T
MT810640 2020-04-08 29409 SARS-CoV-2/human/USA/SEARCH-1172-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4540T G4904T G5206T C5784T C14408T A23403G C24138T C25350T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C4540T G4904T G5206T C5784T C14408T A23403G C24138T C25350T
EPI_ISL_494413 2020-04-08 29854 hCoV-19/USA/CA-ALSR-1172/2020 United States/California
C3037T C4582T C11102T C14408T A20268G A23403G
MT810582 2020-03-26 29409 SARS-CoV-2/human/USA/SEARCH-0466-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4582T C11102T C14408T A20268G A23403G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATT1- C241T C3037T C4582T C11102T C14408T A20268G A23403G
EPI_ISL_483158 2020-03-26 29900 hCoV-19/USA/CA-ALSR-0466-IPL/2020 United States/California/Imperial
C3037T C4582T C6525T C11102T C14408T A20268G T20976C A23403G C23709T
MT811311 2020-05-16 29409 SARS-CoV-2/human/USA/SEARCH-0681-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4582T C6525T C11102T C14408T A20268G T20976C A23403G C23709T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C3037T C4582T C6525T C11102T C14408T A20268G T20976C A23403G C23709T
EPI_ISL_483298 2020-05-16 29899 hCoV-19/USA/CA-ALSR-0681-IPL/2020 United States/California/Imperial
C3037T C4582T C8175T C14408T A20268G A23403G
MT811270 2020-04-20 29409 SARS-CoV-2/human/USA/SEARCH-0612-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4582T C8175T C14408T A20268G A23403G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C4582T C8175T C14408T A20268G A23403G
EPI_ISL_483257 2020-04-20 29903 hCoV-19/USA/CA-ALSR-0612-SAN/2020 United States/California/San Diego
MT811463 2020-04-20 29409 SARS-CoV-2/human/USA/SEARCH-1002-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C4582T C8175T C14408T A20268G A23403G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C3037T C4582T C8175T C14408T A20268G A23403G
EPI_ISL_483456 2020-04-20 29899 hCoV-19/USA/CA-ALSR-1002-SAN/2020 United States/California/San Diego
C3037T C5171T C14408T A20268G G21867T A23403G C27903T C28854T
MT810624 2020-04-27 29409 SARS-CoV-2/human/USA/SEARCH-1154-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C5171T C14408T A20268G G21867T A23403G C27903T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATT1- C241T C3037T C5171T C14408T A20268G G21867T A23403G C27903T C28854T
EPI_ISL_494397 2020-04-27 29900 hCoV-19/USA/CA-ALSR-1154/2020 United States/California/San Diego
C3037T C5467T C8389T C12249T C13487T C14408T A23403G G25563T
MT811392 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-0820-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C5467T C8389T C12249T C13487T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCT1- C241T C3037T C5467T C8389T C12249T C13487T C14408T A23403G G25563T
EPI_ISL_483380 2020-04-02 29886 hCoV-19/USA/CA-ALSR-0820-SAN/2020 United States/California/San Diego
C3037T C5467T C8389T C12249T C13487T C14408T C17825T A23403G G25563T
MT810898 2020-04-28 29409 SARS-CoV-2/human/USA/SEARCH-1627-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C5467T C8389T C12249T C13487T C14408T C17825T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C5467T C8389T C12249T C13487T C14408T C17825T A23403G G25563T
EPI_ISL_494697 2020-04-28 29864 hCoV-19/USA/CA-ALSR-1627/2020 United States/California/San Diego
C3037T C5869T C14408T G18106T A20268G C22323T A23403G T24076C C28854T G29300T
MT811416 2020-04-27 29409 SARS-CoV-2/human/USA/SEARCH-0907-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C5869T C14408T G18106T A20268G C22323T A23403G T24076C C28854T G29300T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5869T C14408T G18106T A20268G C22323T A23403G T24076C C28854T G29300T
EPI_ISL_483409 2020-04-27 29865 hCoV-19/USA/CA-ALSR-0907-IPL/2020 United States/California/Imperial
C3037T C6196T C14408T T15432C A20268G A23403G T24076C C28854T
MT811275 2020-04-22 29409 SARS-CoV-2/human/USA/SEARCH-0621-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C6196T C14408T T15432C A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6196T C14408T T15432C A20268G A23403G T24076C C28854T
EPI_ISL_483262 2020-04-22 29865 hCoV-19/USA/CA-ALSR-0621-IPL/2020 United States/California/Imperial
MT811286 2020-04-22 29409 SARS-CoV-2/human/USA/SEARCH-0638-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C6196T C14408T T15432C A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C6196T C14408T T15432C A20268G A23403G T24076C C28854T
EPI_ISL_483273 2020-04-22 29854 hCoV-19/USA/CA-ALSR-0638-IPL/2020 United States/California/Imperial
MT811479 2020-04-22 29409 SARS-CoV-2/human/USA/SEARCH-1028-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C6196T C14408T T15432C A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C6196T C14408T T15432C A20268G A23403G T24076C C28854T
EPI_ISL_483472 2020-04-22 29864 hCoV-19/USA/CA-ALSR-1028-IPL/2020 United States/California/Imperial
C3037T C6196T C14408T T15432C A20268G A23403G T24076C C28854T A29436G
MT811458 2020-04-23 29409 SARS-CoV-2/human/USA/SEARCH-0997-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C6196T C14408T T15432C A20268G A23403G T24076C C28854T A29436G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C6196T C14408T T15432C A20268G A23403G T24076C C28854T A29436G
EPI_ISL_483451 2020-04-23 29856 hCoV-19/USA/CA-ALSR-0997-IPL/2020 United States/California/Imperial
C3037T C6558T C14408T C16830T A20268G A23403G A28401T C28854T
MT811492 2020-06-20 29409 SARS-CoV-2/human/USA/SEARCH-1056-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C6558T C14408T C16830T A20268G A23403G A28401T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C6558T C14408T C16830T A20268G A23403G A28401T C28854T
EPI_ISL_483487 2020-06-20 29864 hCoV-19/USA/CA-ALSR-1056-SAN/2020 United States/California/San Diego
C3037T C6633T C14408T C18060A A20268G A23403G T27656C C28854T G29374T
MT811506 2020-06-23 29409 SARS-CoV-2/human/USA/SEARCH-1074-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C6633T C14408T C18060A A20268G A23403G T27656C C28854T G29374T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTA1- C241T C3037T C6633T C14408T C18060A A20268G A23403G T27656C C28854T G29374T
EPI_ISL_483501 2020-06-23 29891 hCoV-19/USA/CA-ALSR-1074-SAN/2020 United States/California/San Diego
C3037T C6813T C14408T A20268G A23403G T27222C C28854T
MT811412 2020-04-29 29409 SARS-CoV-2/human/USA/SEARCH-0902-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C6813T C14408T A20268G A23403G T27222C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6813T C14408T A20268G A23403G T27222C C28854T
EPI_ISL_483405 2020-04-29 29865 hCoV-19/USA/CA-ALSR-0902-IPL/2020 United States/California/Imperial
C3037T C6813T G11083T C14408T A23403G GGG28881AAC
MT811365 2020-04-15 29409 SARS-CoV-2/human/USA/SEARCH-0781-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C6813T G11083T C14408T A23403G GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C6813T G11083T C14408T A23403G GGG28881AAC
EPI_ISL_483353 2020-04-15 29864 hCoV-19/USA/CA-ALSR-0781-SAN/2020 United States/California/San Diego
C3037T C7279T C14408T A19540G A20268G A23403G G26834A C28854T
MT811475 2020-04-16 29409 SARS-CoV-2/human/USA/SEARCH-1022-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C7279T C14408T A19540G A20268G A23403G G26834A C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C7279T C14408T A19540G A20268G A23403G G26834A C28854T
EPI_ISL_483468 2020-04-16 29863 hCoV-19/USA/CA-ALSR-1022-SAN/2020 United States/California/San Diego
C3037T C7600T G13201A C14408T A20268G A23403G C28854T
MT811491 2020-06-23 29409 SARS-CoV-2/human/USA/SEARCH-1055-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C7600T G13201A C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTT1- G105T C241T C3037T C7600T G13201A C14408T A20268G A23403G C28854T
EPI_ISL_483486 2020-06-23 29893 hCoV-19/USA/CA-ALSR-1055-SAN/2020 United States/California/San Diego
C3037T C7720T C9719A C14408T G17427T G18028T C18395T A20268G A23403G C28854T
MT810758 2020-04-28 29409 SARS-CoV-2/human/MEX/SEARCH-1476-TIJ/2020 Mexico/Tijuana/BajaCalifornia
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C7720T C9719A C14408T G17427T G18028T C18395T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C7720T C9719A C14408T G17427T G18028T C18395T A20268G A23403G C28854T
EPI_ISL_496345 2020-04-28 29854 hCoV-19/Mexico/ALSR-1476/2020 Mexico/Baja California/Tijuana
C3037T C7765A C14408T A23403G GGG28881AAC
MT811371 2020-04-07 29409 SARS-CoV-2/human/USA/SEARCH-0789-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C7765A C14408T A23403G GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C7765A C14408T A23403G GGG28881AAC
EPI_ISL_483359 2020-04-07 29854 hCoV-19/USA/CA-ALSR-0789-SAN/2020 United States/California/San Diego
C3037T C7768T C11575T C14408T A20268G A23403G C28854T
MT810776 2020-04-22 29409 SARS-CoV-2/human/MEX/SEARCH-1702-TIJ/2020 Mexico/Tijuana/BajaCalifornia
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTA1- C241T C3037T C7768T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_496363 2020-04-22 29891 hCoV-19/Mexico/ALSR-1702/2020 Mexico/Baja California/Tijuana
MT810657 2020-04-24 29409 SARS-CoV-2/human/USA/SEARCH-1196-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C7768T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_494430 2020-04-24 29854 hCoV-19/USA/CA-ALSR-1196/2020 United States/California/San Diego
MT810660 2020-04-24 29409 SARS-CoV-2/human/USA/SEARCH-1201-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C7768T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_494433 2020-04-24 29903 hCoV-19/USA/CA-ALSR-1201/2020 United States/California/San Diego
MT810663 2020-04-24 29409 SARS-CoV-2/human/USA/SEARCH-1204-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACC1- C241T C3037T C7768T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_494436 2020-04-24 29887 hCoV-19/USA/CA-ALSR-1204/2020 United States/California/San Diego
MT810664 2020-04-24 29409 SARS-CoV-2/human/USA/SEARCH-1207-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C7768T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_494437 2020-04-24 29854 hCoV-19/USA/CA-ALSR-1207/2020 United States/California/San Diego
MT810669 2020-04-24 29409 SARS-CoV-2/human/USA/SEARCH-1214-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGT1- C241T C3037T C7768T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_494442 2020-04-24 29894 hCoV-19/USA/CA-ALSR-1214/2020 United States/California/San Diego
MT810976 2020-04-28 29409 SARS-CoV-2/human/USA/SEARCH-0351-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C7768T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_458238 2020-04-28 29903 hCoV-19/USA/CA-SR0351/2020 United States/California/San Diego
MT811224 2020-05-05 29409 SARS-CoV-2/human/USA/SEARCH-0535-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C7768T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_483208 2020-05-05 29864 hCoV-19/USA/CA-ALSR-0535-SAN/2020 United States/California/San Diego
MT810488 2020-05-07 29409 SARS-CoV-2/human/USA/SEARCH-1391-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7768T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_494580 2020-05-07 29873 hCoV-19/USA/CA-ALSR-1391/2020 United States/California/San Diego
C3037T C7768T C11575T C14408T A20268G A23403G C28854T C29353T
MT810694 2020-04-28 29409 SARS-CoV-2/human/USA/SEARCH-1267-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C7768T C11575T C14408T A20268G A23403G C28854T C29353T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAA1- C241T C3037T C7768T C11575T C14408T A20268G A23403G C28854T C29353T
EPI_ISL_494467 2020-04-28 29897 hCoV-19/USA/CA-ALSR-1267/2020 United States/California/San Diego
C3037T C7768T C11575T C14408T C17285T A20268G A23403G G24815A C27196T C28854T
MT810698 2020-05-11 29409 SARS-CoV-2/human/USA/SEARCH-1273-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C7768T C11575T C14408T C17285T A20268G A23403G G24815A C27196T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C7768T C11575T C14408T C17285T A20268G A23403G G24815A C27196T C28854T
EPI_ISL_494471 2020-05-11 29903 hCoV-19/USA/CA-ALSR-1273/2020 United States/California/San Diego
C3037T C7768T C11575T C14408T C17470T G19962T A20268G A23403G C28854T
MT810788 2020-04-29 29409 SARS-CoV-2/human/MEX/SEARCH-1714-TIJ/2020 Mexico/Tijuana/BajaCalifornia
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C7768T C11575T C14408T C17470T G19962T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C7768T C11575T C14408T C17470T G19962T A20268G A23403G C28854T
EPI_ISL_496375 2020-04-29 29865 hCoV-19/Mexico/ALSR-1714/2020 Mexico/Baja California/Tijuana
C3037T C7768T C11575T C14408T G14653T G19072T A20268G A23403G C25721T C28854T
MT810789 2020-04-29 29409 SARS-CoV-2/human/MEX/SEARCH-1715-TIJ/2020 Mexico/Tijuana/BajaCalifornia
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C7768T C11575T C14408T G14653T G19072T A20268G A23403G C25721T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGT1- C241T C3037T C7768T C11575T C14408T G14653T G19072T A20268G A23403G C25721T C28854T
EPI_ISL_496376 2020-04-29 29894 hCoV-19/Mexico/ALSR-1715/2020 Mexico/Baja California/Tijuana
C3037T C7768T C11575T C14408T G19525T A20268G A23403G C28854T
MT811461 2020-04-22 29409 SARS-CoV-2/human/USA/SEARCH-1000-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C7768T C11575T C14408T G19525T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C7768T C11575T C14408T G19525T A20268G A23403G C28854T
EPI_ISL_483454 2020-04-22 29858 hCoV-19/USA/CA-ALSR-1000-SAN/2020 United States/California/San Diego
C3037T C7768T C8802T C11575T C14408T A20268G A23403G C28854T
MT810708 2020-05-01 29409 SARS-CoV-2/human/USA/SEARCH-1288-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C7768T C8802T C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C7768T C8802T C11575T C14408T A20268G A23403G C28854T
EPI_ISL_494481 2020-05-01 29854 hCoV-19/USA/CA-ALSR-1288/2020 United States/California/San Diego
C3037T C7768T T9037G C11575T C14408T A20268G A23403G C28854T
MT810897 2020-04-26 29409 SARS-CoV-2/human/USA/SEARCH-1626-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C7768T T9037G C11575T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T C7768T T9037G C11575T C14408T A20268G A23403G C28854T
EPI_ISL_494696 2020-04-26 29862 hCoV-19/USA/CA-ALSR-1626/2020 United States/California/San Diego
C3037T C8326T C14408T G16843T A20268G A23403G A25253G C26735T C28498T C28854T
MT810695 2020-05-04 29409 SARS-CoV-2/human/USA/SEARCH-1268-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C8326T C14408T G16843T A20268G A23403G A25253G C26735T C28498T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C8326T C14408T G16843T A20268G A23403G A25253G C26735T C28498T C28854T
EPI_ISL_494468 2020-05-04 29903 hCoV-19/USA/CA-ALSR-1268/2020 United States/California/San Diego
C3037T C9096T C14408T G19969A A20268G A23403G C28854T
MT810494 2020-05-05 29409 SARS-CoV-2/human/USA/SEARCH-1410-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C9096T C14408T G19969A A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C9096T C14408T G19969A A20268G A23403G C28854T
EPI_ISL_494586 2020-05-05 29854 hCoV-19/USA/CA-ALSR-1410/2020 United States/California/San Diego
C3037T C9195T C14408T G16245T G16741A A20268G C21928T A23403G G25726C C28854T
MT811505 2020-06-22 29409 SARS-CoV-2/human/USA/SEARCH-1072-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C9195T C14408T G16245T G16741A A20268G C21928T A23403G G25726C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACC1- C241T C3037T C9195T C14408T G16245T G16741A A20268G C21928T A23403G G25726C C28854T
EPI_ISL_483500 2020-06-22 29887 hCoV-19/USA/CA-ALSR-1072-SAN/2020 United States/California/San Diego
C3037T C9430T C14408T G18972T G19969A A20268G A23403G C26124T C28854T
MT811257 2020-04-15 29409 SARS-CoV-2/human/USA/SEARCH-0585-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C9430T C14408T G18972T G19969A A20268G A23403G C26124T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C3037T C9430T C14408T G18972T G19969A A20268G A23403G C26124T C28854T
EPI_ISL_483241 2020-04-15 29899 hCoV-19/USA/CA-ALSR-0585-SAN/2020 United States/California/San Diego
MT811465 2020-04-17 29409 SARS-CoV-2/human/USA/SEARCH-1004-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C9430T C14408T G18972T G19969A A20268G A23403G C26124T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTA1- C241T C3037T C9430T C14408T G18972T G19969A A20268G A23403G C26124T C28854T
EPI_ISL_483458 2020-04-17 29891 hCoV-19/USA/CA-ALSR-1004-SAN/2020 United States/California/San Diego
MT811469 2020-04-19 29409 SARS-CoV-2/human/USA/SEARCH-1014-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C9430T C14408T G18972T G19969A A20268G A23403G C26124T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C9430T C14408T G18972T G19969A A20268G A23403G C26124T C28854T
EPI_ISL_483462 2020-04-19 29854 hCoV-19/USA/CA-ALSR-1014-SAN/2020 United States/California/San Diego
C3037T C9430T C14408T G18972T G19969A A20268G A23403G C28854T
MT810947 2020-04-25 29409 SARS-CoV-2/human/USA/SEARCH-0233-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C9430T C14408T G18972T G19969A A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T C9430T C14408T G18972T G19969A A20268G A23403G C28854T
EPI_ISL_437571 2020-04-25 29903 hCoV-19/USA/CA-SR0233/2020 United States/California/San Diego
C3037T C9430T C14408T G19656T G19969A A20268G A23403G C28854T
MT810497 2020-04-21 29409 SARS-CoV-2/human/USA/SEARCH-1415-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C9430T C14408T G19656T G19969A A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C3037T C9430T C14408T G19656T G19969A A20268G A23403G C28854T
EPI_ISL_494589 2020-04-21 29899 hCoV-19/USA/CA-ALSR-1415/2020 United States/California/San Diego
C3037T C9438T C12132T C14408T A20268G A23403G C28854T
MT810642 2020-04-28 29409 SARS-CoV-2/human/USA/SEARCH-1177-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C9438T C12132T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C9438T C12132T C14408T A20268G A23403G C28854T
EPI_ISL_494415 2020-04-28 29861 hCoV-19/USA/CA-ALSR-1177/2020 United States/California/San Diego
C3037T C9438T C14408T A20268G C21772T A23403G C28854T
MT810774 2020-04-22 29409 SARS-CoV-2/human/MEX/SEARCH-1700-TIJ/2020 Mexico/Tijuana/BajaCalifornia
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C9438T C14408T A20268G C21772T A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
AT1- C241T C3037T C9438T C14408T A20268G C21772T A23403G C28854T
EPI_ISL_496361 2020-04-22 29901 hCoV-19/Mexico/ALSR-1700/2020 Mexico/Baja California/Tijuana
C3037T C9665T C10156T C14408T A20268G A23403G T24076C C25587T C28854T
MT811283 2020-04-23 29409 SARS-CoV-2/human/USA/SEARCH-0631-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C9665T C10156T C14408T A20268G A23403G T24076C C25587T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATT1- C241T C3037T C9665T C10156T C14408T A20268G A23403G T24076C C25587T C28854T
EPI_ISL_483270 2020-04-23 29900 hCoV-19/USA/CA-ALSR-0631-IPL/2020 United States/California/Imperial
MT811471 2020-04-23 29409 SARS-CoV-2/human/USA/SEARCH-1016-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T C9665T C10156T C14408T A20268G A23403G T24076C C25587T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C9665T C10156T C14408T A20268G A23403G T24076C C25587T C28854T
EPI_ISL_483464 2020-04-23 29875 hCoV-19/USA/CA-ALSR-1016-IPL/2020 United States/California/Imperial
C3037T G10360A C14408T A23403G G24757T A27938G GGG28881AAC
MT810926 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0190-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G10360A C14408T A23403G G24757T A27938G GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T G10360A C14408T A23403G G24757T A27938G GGG28881AAC
EPI_ISL_437590 2020-03-30 29903 hCoV-19/USA/CA-SR0190/2020 United States/California/San Diego
C3037T G10625A C14408T A15363G C18568T A20268G A23403G T24076C C28854T
MT811347 2020-05-01 29409 SARS-CoV-2/human/USA/SEARCH-0754-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G10625A C14408T A15363G C18568T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T G10625A C14408T A15363G C18568T A20268G A23403G T24076C C28854T
EPI_ISL_483334 2020-05-01 29903 hCoV-19/USA/CA-ALSR-0754-IPL/2020 United States/California/Imperial
MT811406 2020-05-01 29409 SARS-CoV-2/human/USA/SEARCH-0843-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G10625A C14408T A15363G C18568T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C3037T G10625A C14408T A15363G C18568T A20268G A23403G T24076C C28854T
EPI_ISL_483394 2020-05-01 29899 hCoV-19/USA/CA-ALSR-0843-IPL/2020 United States/California/Imperial
C3037T G10759T C14408T A20268G A23403G C28854T
MT810487 2020-05-07 29409 SARS-CoV-2/human/USA/SEARCH-1390-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G10759T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T G10759T C14408T A20268G A23403G C28854T
EPI_ISL_494579 2020-05-07 29854 hCoV-19/USA/CA-ALSR-1390/2020 United States/California/San Diego
C3037T G11083T C12488T C14408T A23403G C25528T G27084A GGG28881AAC
MT811527 2020-06-18 29409 SARS-CoV-2/human/USA/SEARCH-1095-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G11083T C12488T C14408T A23403G C25528T G27084A GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G11083T C12488T C14408T A23403G C25528T G27084A GGG28881AAC
EPI_ISL_483522 2020-06-18 29865 hCoV-19/USA/CA-ALSR-1095-SAN/2020 United States/California/San Diego
C3037T G11083T C13665T C14408T C16468T C17444T A23403G G26049T GGG28881AAC
MT811535 2020-06-14 29409 SARS-CoV-2/human/USA/SEARCH-1106-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G11083T C13665T C14408T C16468T C17444T A23403G G26049T GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G11083T C13665T C14408T C16468T C17444T A23403G G26049T GGG28881AAC
EPI_ISL_483530 2020-06-14 29864 hCoV-19/USA/CA-ALSR-1106-SAN/2020 United States/California/San Diego
C3037T G11083T C14408T A20268G A23403G G23522A A25747C C28854T
MT811526 2020-06-19 29409 SARS-CoV-2/human/USA/SEARCH-1094-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G11083T C14408T A20268G A23403G G23522A A25747C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- G208T C241T C3037T G11083T C14408T A20268G A23403G G23522A A25747C C28854T
EPI_ISL_483521 2020-06-19 29899 hCoV-19/USA/CA-ALSR-1094-SAN/2020 United States/California/San Diego
C3037T G11243T C14408T A20268G A23403G T24076C G25654T C28854T
MT811234 2020-05-11 29409 SARS-CoV-2/human/USA/SEARCH-0552-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G11243T C14408T A20268G A23403G T24076C G25654T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G11243T C14408T A20268G A23403G T24076C G25654T C28854T
EPI_ISL_483218 2020-05-11 29864 hCoV-19/USA/CA-ALSR-0552-IPL/2020 United States/California/Imperial
C3037T G11243T C14408T C19172T A20268G A23403G T24076C C26195A C28854T
MT811252 2020-05-16 29409 SARS-CoV-2/human/USA/SEARCH-0580-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G11243T C14408T C19172T A20268G A23403G T24076C C26195A C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T G11243T C14408T C19172T A20268G A23403G T24076C C26195A C28854T
EPI_ISL_483236 2020-05-16 29854 hCoV-19/USA/CA-ALSR-0580-IPL/2020 United States/California/Imperial
C3037T G12718A C14408T A20268G A23403G T24076C C28854T
MT810551 2020-04-20 29409 SARS-CoV-2/human/USA/SEARCH-1689-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G12718A C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G12718A C14408T A20268G A23403G T24076C C28854T
EPI_ISL_494746 2020-04-20 29865 hCoV-19/USA/CA-ALSR-1689/2020 United States/California/San Diego
MT810503 2020-04-21 29409 SARS-CoV-2/human/USA/SEARCH-1426-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G12718A C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACC1- C241T C3037T G12718A C14408T A20268G A23403G T24076C C28854T
EPI_ISL_494595 2020-04-21 29887 hCoV-19/USA/CA-ALSR-1426/2020 United States/California/San Diego
C3037T G3242A C4582T C8175T C14408T A20268G A23403G
MT811281 2020-04-23 29409 SARS-CoV-2/human/USA/SEARCH-0629-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G3242A C4582T C8175T C14408T A20268G A23403G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G3242A C4582T C8175T C14408T A20268G A23403G
EPI_ISL_483268 2020-04-23 29864 hCoV-19/USA/CA-ALSR-0629-IPL/2020 United States/California/Imperial
C3037T G3259T C11067T C14408T A20268G C20762T A23403G C23589T G26167C C28854T C29118T C29420T
MT811513 2020-06-23 29409 SARS-CoV-2/human/USA/SEARCH-1081-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G3259T C11067T C14408T A20268G C20762T A23403G C23589T G26167C C28854T C29118T C29420T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3259T C11067T C14408T A20268G C20762T A23403G C23589T G26167C C28854T C29118T C29420T
EPI_ISL_483508 2020-06-23 29865 hCoV-19/USA/CA-ALSR-1081-SAN/2020 United States/California/San Diego
C3037T G3485A A6342G C9474T C14408T A20268G A23403G C28854T
MT810686 2020-05-06 29409 SARS-CoV-2/human/USA/SEARCH-1255-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G3485A A6342G C9474T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGG1- T11C C241T C3037T G3485A A6342G C9474T C14408T A20268G A23403G C28854T
EPI_ISL_494459 2020-05-06 29895 hCoV-19/USA/CA-ALSR-1255/2020 United States/California/San Diego
MT810493 2020-05-09 29409 SARS-CoV-2/human/USA/SEARCH-1407-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G3485A A6342G C9474T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
T11C C241T C3037T G3485A A6342G C9474T C14408T A20268G A23403G C28854T
EPI_ISL_494585 2020-05-09 29903 hCoV-19/USA/CA-ALSR-1407/2020 United States/California/San Diego
C3037T G3871A T6039C C14408T A20268G A23403G T24076C G28790A C28854T
C3037T G4136A C11575T C14408T C19029T A20268G A23403G C25469T C28854T
MT810985 2020-05-17 29409 SARS-CoV-2/human/USA/SEARCH-0365-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G4136A C11575T C14408T C19029T A20268G A23403G C25469T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C3037T G4136A C11575T C14408T C19029T A20268G A23403G C25469T C28854T
EPI_ISL_458248 2020-05-17 29903 hCoV-19/USA/CA-SR0365/2020 United States/California/San Diego
C3037T G4225T C14408T A23403G GGG28881AAC
MT811217 2020-04-09 29409 SARS-CoV-2/human/USA/SEARCH-0522-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G4225T C14408T A23403G GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACC1- C241T C3037T G4225T C14408T A23403G GGG28881AAC
EPI_ISL_483200 2020-04-09 29887 hCoV-19/USA/CA-ALSR-0522-SAN/2020 United States/California/San Diego
MT811400 2020-04-09 29409 SARS-CoV-2/human/USA/SEARCH-0833-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G4225T C14408T A23403G GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T G4225T C14408T A23403G GGG28881AAC
EPI_ISL_483389 2020-04-09 29854 hCoV-19/USA/CA-ALSR-0833-SAN/2020 United States/California/San Diego
C3037T G4510T C4582T C11102T C14408T A20268G A23403G
MT811277 2020-04-21 29409 SARS-CoV-2/human/USA/SEARCH-0624-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G4510T C4582T C11102T C14408T A20268G A23403G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAG1- C241T C3037T G4510T C4582T C11102T C14408T A20268G A23403G
EPI_ISL_483264 2020-04-21 29896 hCoV-19/USA/CA-ALSR-0624-IPL/2020 United States/California/Imperial
MT811482 2020-04-21 29409 SARS-CoV-2/human/USA/SEARCH-1035-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G4510T C4582T C11102T C14408T A20268G A23403G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACC1- C241T C3037T G4510T C4582T C11102T C14408T A20268G A23403G
EPI_ISL_483475 2020-04-21 29887 hCoV-19/USA/CA-ALSR-1035-IPL/2020 United States/California/Imperial
C3037T G5555A A12124T C14408T A20268G A23403G T24076C C28854T
MT810858 2020-05-11 29409 SARS-CoV-2/human/USA/SEARCH-1550-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G5555A A12124T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G5555A A12124T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_494657 2020-05-11 29865 hCoV-19/USA/CA-ALSR-1550/2020 United States/California/San Diego
C3037T G5668A C5884T C14408T T18083C A20268G A23403G C28854T
MT810894 2020-05-19 29409 SARS-CoV-2/human/USA/SEARCH-1622-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G5668A C5884T C14408T T18083C A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5668A C5884T C14408T T18083C A20268G A23403G C28854T
EPI_ISL_494693 2020-05-19 29849 hCoV-19/USA/CA-ALSR-1622/2020 United States/California/San Diego
C3037T G6367T G11083T C14408T A20268G A23403G T24076C C28854T
MT811247 2020-05-12 29409 SARS-CoV-2/human/USA/SEARCH-0571-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G6367T G11083T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C3037T G6367T G11083T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_483231 2020-05-12 29899 hCoV-19/USA/CA-ALSR-0571-IPL/2020 United States/California/Imperial
C3037T G9105A C14408T A23403G C25614T
MT811437 2020-03-29 29409 SARS-CoV-2/human/USA/SEARCH-0953-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G9105A C14408T A23403G C25614T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G9105A C14408T A23403G C25614T
EPI_ISL_483430 2020-03-29 29864 hCoV-19/USA/CA-ALSR-0953-SAN/2020 United States/California/San Diego
C3037T G9224T C14408T G16741A C17012T A20268G A23403G C28854T
MT810842 2020-05-03 29409 SARS-CoV-2/human/USA/SEARCH-1522-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G9224T C14408T G16741A C17012T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACC1- C241T C3037T G9224T C14408T G16741A C17012T A20268G A23403G C28854T
EPI_ISL_494641 2020-05-03 29887 hCoV-19/USA/CA-ALSR-1522/2020 United States/California/San Diego
C3037T G9802T C14408T A20268G G21786T A23403G C28854T
MT810649 2020-04-28 29409 SARS-CoV-2/human/USA/SEARCH-1186-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G9802T C14408T A20268G G21786T A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C3037T G9802T C14408T A20268G G21786T A23403G C28854T
EPI_ISL_494422 2020-04-28 29899 hCoV-19/USA/CA-ALSR-1186/2020 United States/California/San Diego
C3037T G9802T C14408T C17976T A20268G C22388T A23403G C25614T C28854T
MT810859 2020-05-05 29409 SARS-CoV-2/human/USA/SEARCH-1551-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G9802T C14408T C17976T A20268G C22388T A23403G C25614T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTA1- C241T C3037T G9802T C14408T C17976T A20268G C22388T A23403G C25614T C28854T
EPI_ISL_494658 2020-05-05 29891 hCoV-19/USA/CA-ALSR-1551/2020 United States/California/San Diego
C3037T G9802T C14408T C17976T A20268G C22388T A23403G C28854T
MT810870 2020-05-03 29409 SARS-CoV-2/human/USA/SEARCH-1580-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G9802T C14408T C17976T A20268G C22388T A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGG1- C241T C3037T G9802T C14408T C17976T A20268G C22388T A23403G C28854T
EPI_ISL_494669 2020-05-03 29895 hCoV-19/USA/CA-ALSR-1580/2020 United States/California/San Diego
MT810857 2020-05-04 29409 SARS-CoV-2/human/USA/SEARCH-1549-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T G9802T C14408T C17976T A20268G C22388T A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTA1- C241T C3037T G9802T C14408T C17976T A20268G C22388T A23403G C28854T
EPI_ISL_494656 2020-05-04 29891 hCoV-19/USA/CA-ALSR-1549/2020 United States/California/San Diego
C3037T T10330C C14408T T15915C A20268G A23403G C28854T
MT811249 2020-05-13 29409 SARS-CoV-2/human/USA/SEARCH-0577-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T T10330C C14408T T15915C A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- G208T C241T C3037T T10330C C14408T T15915C A20268G A23403G C28854T
EPI_ISL_483233 2020-05-13 29854 hCoV-19/USA/CA-ALSR-0577-IPL/2020 United States/California/Imperial
C3037T T12440C C14408T A20268G A23403G C24771T C26456T C28854T G29254A
MT810492 2020-05-05 29409 SARS-CoV-2/human/USA/SEARCH-1398-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T T12440C C14408T A20268G A23403G C24771T C26456T C28854T G29254A CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12440C C14408T A20268G A23403G C24771T C26456T C28854T G29254A
EPI_ISL_494584 2020-05-05 29849 hCoV-19/USA/CA-ALSR-1398/2020 United States/California/San Diego
C3037T T14361C C14408T A20268G A23403G C28854T
MT810485 2020-05-08 29409 SARS-CoV-2/human/USA/SEARCH-1387-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T T14361C C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T14361C C14408T A20268G A23403G C28854T
EPI_ISL_494577 2020-05-08 29865 hCoV-19/USA/CA-ALSR-1387/2020 United States/California/San Diego
MT810486 2020-05-08 29409 SARS-CoV-2/human/USA/SEARCH-1388-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T T14361C C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T T14361C C14408T A20268G A23403G C28854T
EPI_ISL_494578 2020-05-08 29856 hCoV-19/USA/CA-ALSR-1388/2020 United States/California/San Diego
MT810495 2020-05-08 29409 SARS-CoV-2/human/USA/SEARCH-1411-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T T14361C C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C3037T T14361C C14408T A20268G A23403G C28854T
EPI_ISL_494587 2020-05-08 29899 hCoV-19/USA/CA-ALSR-1411/2020 United States/California/San Diego
C3037T T3282C C14408T A19727C A20268G A23403G T24076C C28854T
MT811237 2020-05-09 29409 SARS-CoV-2/human/USA/SEARCH-0557-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T T3282C C14408T A19727C A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTA1- C241T C3037T T3282C C14408T A19727C A20268G A23403G T24076C C28854T
EPI_ISL_483221 2020-05-09 29891 hCoV-19/USA/CA-ALSR-0557-SAN/2020 United States/California/San Diego
C3037T T3282C C14408T A20268G A23403G T24076C C28854T
MT811298 2020-04-29 29409 SARS-CoV-2/human/USA/SEARCH-0660-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T T3282C C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T T3282C C14408T A20268G A23403G T24076C C28854T
EPI_ISL_483285 2020-04-29 29864 hCoV-19/USA/CA-ALSR-0660-IPL/2020 United States/California/Imperial
MT811345 2020-05-03 29409 SARS-CoV-2/human/USA/SEARCH-0752-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T T3282C C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T T3282C C14408T A20268G A23403G T24076C C28854T
EPI_ISL_483332 2020-05-03 29856 hCoV-19/USA/CA-ALSR-0752-IPL/2020 United States/California/Imperial
MT811422 2020-05-03 29409 SARS-CoV-2/human/USA/SEARCH-0923-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T T3282C C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T T3282C C14408T A20268G A23403G T24076C C28854T
EPI_ISL_483415 2020-05-03 29858 hCoV-19/USA/CA-ALSR-0923-IPL/2020 United States/California/Imperial
C3037T T5065C C14408T A20268G TTA21991- A23403G
MT811363 2020-04-11 29406 SARS-CoV-2/human/USA/SEARCH-0776-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T T5065C C14408T A20268G TTA21991- A23403G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T T5065C C14408T A20268G TTA21991- A23403G
EPI_ISL_483351 2020-04-11 29860 hCoV-19/USA/CA-ALSR-0776-SAN/2020 United States/California/San Diego
C3037T T5290C C11074T C14408T A20268G A23403G C28854T
MT810491 2020-05-05 29409 SARS-CoV-2/human/USA/SEARCH-1397-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T T5290C C11074T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTA1- C241T C3037T T5290C C11074T C14408T A20268G A23403G C28854T
EPI_ISL_494583 2020-05-05 29891 hCoV-19/USA/CA-ALSR-1397/2020 United States/California/San Diego
C3037T T5290C C14408T A20268G A23403G C28292A C28854T
MT810677 2020-05-05 29409 SARS-CoV-2/human/USA/SEARCH-1228-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C3037T T5290C C14408T A20268G A23403G C28292A C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTA1- C241T C3037T T5290C C14408T A20268G A23403G C28292A C28854T
EPI_ISL_494450 2020-05-05 29891 hCoV-19/USA/CA-ALSR-1228/2020 United States/California/San Diego
C313T C1059T C3037T C3373T A12820G C14408T A23403G G25563T G29543T
MT811299 2020-04-18 29409 SARS-CoV-2/human/USA/SEARCH-0661-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C313T C1059T C3037T C3373T A12820G C14408T A23403G G25563T G29543T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C1059T C3037T C3373T A12820G C14408T A23403G G25563T G29543T
EPI_ISL_483286 2020-04-18 29865 hCoV-19/USA/CA-ALSR-0661-IPL/2020 United States/California/Imperial
C313T C823T C3037T G4319A C14408T A23403G G28817T GGG28881AAC
MT811344 2020-05-06 29409 SARS-CoV-2/human/USA/SEARCH-0746-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C313T C823T C3037T G4319A C14408T A23403G G28817T GGG28881AAC CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C313T C823T C3037T G4319A C14408T A23403G G28817T GGG28881AAC
EPI_ISL_483331 2020-05-06 29899 hCoV-19/USA/CA-ALSR-0746-IPL/2020 United States/California/Imperial
C335T C1059T C3037T C14408T A23403G G25563T C29245T
MT811332 2020-03-29 29409 SARS-CoV-2/human/USA/SEARCH-0713-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C335T C1059T C3037T C14408T A23403G G25563T C29245T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C335T C1059T C3037T C14408T A23403G G25563T C29245T
EPI_ISL_483319 2020-03-29 29854 hCoV-19/USA/CA-ALSR-0713-SAN/2020 United States/California/San Diego
C346T C1059T C2470T C3037T C3130T C14408T C20759T T22939C A23403G G25563T
MT810907 2020-05-19 29409 SARS-CoV-2/human/USA/SEARCH-1638-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C346T C1059T C2470T C3037T C3130T C14408T C20759T T22939C A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C346T C1059T C2470T C3037T C3130T C14408T C20759T T22939C A23403G G25563T
EPI_ISL_494706 2020-05-19 29864 hCoV-19/USA/CA-ALSR-1638/2020 United States/California/San Diego
C346T C3037T C10332T C14408T A20268G A23403G C28854T
MT810766 2020-04-27 29409 SARS-CoV-2/human/MEX/SEARCH-1692-TIJ/2020 Mexico/Tijuana/BajaCalifornia
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C346T C3037T C10332T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
AT1- C241T C346T C3037T C10332T C14408T A20268G A23403G C28854T
EPI_ISL_496353 2020-04-27 29901 hCoV-19/Mexico/ALSR-1692/2020 Mexico/Baja California/Tijuana
C379A C1059T C3037T A4687T C14408T C15857T A23403G G25563T
MT810846 2020-05-01 29409 SARS-CoV-2/human/USA/SEARCH-1530-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C379A C1059T C3037T A4687T C14408T C15857T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C379A C1059T C3037T A4687T C14408T C15857T A23403G G25563T
EPI_ISL_494645 2020-05-01 29855 hCoV-19/USA/CA-ALSR-1530/2020 United States/California/San Diego
MT810728 2020-05-04 29409 SARS-CoV-2/human/USA/SEARCH-1337-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C379A C1059T C3037T A4687T C14408T C15857T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCT1- C241T C379A C1059T C3037T A4687T C14408T C15857T A23403G G25563T
EPI_ISL_494500 2020-05-04 29886 hCoV-19/USA/CA-ALSR-1337/2020 United States/California/San Diego
C379A C1059T C3037T A4687T C14408T C15857T A23403G G25563T G25981T
MT810900 2020-04-25 29409 SARS-CoV-2/human/USA/SEARCH-1629-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C379A C1059T C3037T A4687T C14408T C15857T A23403G G25563T G25981T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C379A C1059T C3037T A4687T C14408T C15857T A23403G G25563T G25981T
EPI_ISL_494699 2020-04-25 29856 hCoV-19/USA/CA-ALSR-1629/2020 United States/California/San Diego
C379A C1059T C3037T C3885T G4657A C14408T A19453C G21578T A23403G G25563T
MT810480 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-1381-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C379A C1059T C3037T C3885T G4657A C14408T A19453C G21578T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C379A C1059T C3037T C3885T G4657A C14408T A19453C G21578T A23403G G25563T
EPI_ISL_494572 2020-03-31 29854 hCoV-19/USA/CA-ALSR-1381/2020 United States/California/San Diego
C379A C1059T C3037T C6027A C14408T A23403G G25563T
MT810831 2020-03-25 29409 SARS-CoV-2/human/USA/SEARCH-1453-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C379A C1059T C3037T C6027A C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C379A C1059T C3037T C6027A C14408T A23403G G25563T
EPI_ISL_494613 2020-03-25 29854 hCoV-19/USA/CA-ALSR-1453/2020 United States/California/San Diego
C379A C1059T C3037T G4657A A13695C C14408T G21578T A23403G G25563T
MT811268 2020-04-20 29409 SARS-CoV-2/human/USA/SEARCH-0610-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C379A C1059T C3037T G4657A A13695C C14408T G21578T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C379A C1059T C3037T G4657A A13695C C14408T G21578T A23403G G25563T
EPI_ISL_483255 2020-04-20 29899 hCoV-19/USA/CA-ALSR-0610-IPL/2020 United States/California/Imperial
MT811470 2020-04-20 29409 SARS-CoV-2/human/USA/SEARCH-1015-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C379A C1059T C3037T G4657A A13695C C14408T G21578T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C379A C1059T C3037T G4657A A13695C C14408T G21578T A23403G G25563T
EPI_ISL_483463 2020-04-20 29865 hCoV-19/USA/CA-ALSR-1015-IPL/2020 United States/California/Imperial
C379A C1059T C3037T G4657A C14408T A19941G G21578T A23403G G25563T
MT811280 2020-04-21 29409 SARS-CoV-2/human/USA/SEARCH-0628-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T A19941G G21578T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C379A C1059T C3037T G4657A C14408T A19941G G21578T A23403G G25563T
EPI_ISL_483267 2020-04-21 29864 hCoV-19/USA/CA-ALSR-0628-IPL/2020 United States/California/Imperial
MT811404 2020-04-21 29409 SARS-CoV-2/human/USA/SEARCH-0839-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T A19941G G21578T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C379A C1059T C3037T G4657A C14408T A19941G G21578T A23403G G25563T
EPI_ISL_483393 2020-04-21 29864 hCoV-19/USA/CA-ALSR-0839-IPL/2020 United States/California/Imperial
C379A C1059T C3037T G4657A C14408T A20755G G21578T A23403G G25563T G29300T
MT811202 2020-04-04 29409 SARS-CoV-2/human/USA/SEARCH-0500-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T A20755G G21578T A23403G G25563T G29300T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C379A C1059T C3037T G4657A C14408T A20755G G21578T A23403G G25563T G29300T
EPI_ISL_483184 2020-04-04 29854 hCoV-19/USA/CA-ALSR-0500-IPL/2020 United States/California/Imperial
MT811401 2020-04-04 29409 SARS-CoV-2/human/USA/SEARCH-0834-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T A20755G G21578T A23403G G25563T G29300T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C379A C1059T C3037T G4657A C14408T A20755G G21578T A23403G G25563T G29300T
EPI_ISL_483390 2020-04-04 29849 hCoV-19/USA/CA-ALSR-0834-IPL/2020 United States/California/Imperial
C379A C1059T C3037T G4657A C14408T C15738T G21578T A23403G G25563T
MT811198 2020-04-04 29409 SARS-CoV-2/human/USA/SEARCH-0495-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T C15738T G21578T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C379A C1059T C3037T G4657A C14408T C15738T G21578T A23403G G25563T
EPI_ISL_483180 2020-04-04 29854 hCoV-19/USA/CA-ALSR-0495-IPL/2020 United States/California/Imperial
C379A C1059T C3037T G4657A C14408T G21578T A23403G C25482T G25563T A27086G
MT811307 2020-04-29 29409 SARS-CoV-2/human/USA/SEARCH-0675-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T G21578T A23403G C25482T G25563T A27086G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
A1- C241T C379A C1059T C3037T G4657A C14408T G21578T A23403G C25482T G25563T A27086G
EPI_ISL_483294 2020-04-29 29902 hCoV-19/USA/CA-ALSR-0675-IPL/2020 United States/California/Imperial
MT811414 2020-04-29 29409 SARS-CoV-2/human/USA/SEARCH-0905-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T G21578T A23403G C25482T G25563T A27086G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATAC1- C241T C379A C1059T C3037T G4657A C14408T G21578T A23403G C25482T G25563T A27086G
EPI_ISL_483407 2020-04-29 29888 hCoV-19/USA/CA-ALSR-0905-IPL/2020 United States/California/Imperial
C379A C1059T C3037T G4657A C14408T G21578T A23403G G25563T
MT810564 2020-03-26 29409 SARS-CoV-2/human/USA/SEARCH-0432-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T G21578T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C379A C1059T C3037T G4657A C14408T G21578T A23403G G25563T
EPI_ISL_467962 2020-03-26 29903 hCoV-19/USA/CA-SR0432/2020 United States/California/San Diego
MT811328 2020-03-29 29409 SARS-CoV-2/human/USA/SEARCH-0706-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T G21578T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C379A C1059T C3037T G4657A C14408T G21578T A23403G G25563T
EPI_ISL_483315 2020-03-29 29873 hCoV-19/USA/CA-ALSR-0706-SAN/2020 United States/California/San Diego
MT811438 2020-03-29 29409 SARS-CoV-2/human/USA/SEARCH-0955-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T G21578T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTT1- C241T C379A C1059T C3037T G4657A C14408T G21578T A23403G G25563T
EPI_ISL_483431 2020-03-29 29893 hCoV-19/USA/CA-ALSR-0955-SAN/2020 United States/California/San Diego
MT811276 2020-04-21 29409 SARS-CoV-2/human/USA/SEARCH-0623-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T G21578T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C379A C1059T C3037T G4657A C14408T G21578T A23403G G25563T
EPI_ISL_483263 2020-04-21 29856 hCoV-19/USA/CA-ALSR-0623-IPL/2020 United States/California/Imperial
C379A C1059T C3037T G4657A C4965T C14408T G21578T A23403G G25563T
MT811279 2020-04-21 29409 SARS-CoV-2/human/USA/SEARCH-0627-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C379A C1059T C3037T G4657A C4965T C14408T G21578T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C379A C1059T C3037T G4657A C4965T C14408T G21578T A23403G G25563T
EPI_ISL_483266 2020-04-21 29854 hCoV-19/USA/CA-ALSR-0627-IPL/2020 United States/California/Imperial
C379A C1059T C3037T G4657A C7231T C14408T C20199T G21578T A23403G G25563T
MT811302 2020-05-01 29409 SARS-CoV-2/human/USA/SEARCH-0667-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C379A C1059T C3037T G4657A C7231T C14408T C20199T G21578T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C379A C1059T C3037T G4657A C7231T C14408T C20199T G21578T A23403G G25563T
EPI_ISL_483289 2020-05-01 29858 hCoV-19/USA/CA-ALSR-0667-IPL/2020 United States/California/Imperial
MT811426 2020-05-01 29409 SARS-CoV-2/human/USA/SEARCH-0930-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C379A C1059T C3037T G4657A C7231T C14408T C20199T G21578T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCT1- C241T C379A C1059T C3037T G4657A C7231T C14408T C20199T G21578T A23403G G25563T
EPI_ISL_483419 2020-05-01 29886 hCoV-19/USA/CA-ALSR-0930-IPL/2020 United States/California/Imperial
C379A C1059T C3037T G4657A G6170C C14408T G21578T A23403G G25563T
MT810534 2020-03-20 29409 SARS-CoV-2/human/USA/SEARCH-1669-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C379A C1059T C3037T G4657A G6170C C14408T G21578T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGG1- C241T C379A C1059T C3037T G4657A G6170C C14408T G21578T A23403G G25563T
EPI_ISL_494729 2020-03-20 29895 hCoV-19/USA/CA-ALSR-1669/2020 United States/California/San Diego
C379A C1059T C3037T G4657A G8371T C14408T G21578T A23403G G25563T
MT811477 2020-04-21 29409 SARS-CoV-2/human/USA/SEARCH-1025-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C379A C1059T C3037T G4657A G8371T C14408T G21578T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C379A C1059T C3037T G4657A G8371T C14408T G21578T A23403G G25563T
EPI_ISL_483470 2020-04-21 29864 hCoV-19/USA/CA-ALSR-1025-IPL/2020 United States/California/Imperial
C379A C1059T G1820A T2602C C3037T G3482A G4657A C7528T C14408T G21578T A23403G C25047A G25563T
MT811297 2020-04-29 29409 SARS-CoV-2/human/USA/SEARCH-0659-IPL/2020 United States/Imperial/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C379A C1059T G1820A T2602C C3037T G3482A G4657A C7528T C14408T G21578T A23403G C25047A G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C379A C1059T G1820A T2602C C3037T G3482A G4657A C7528T C14408T G21578T A23403G C25047A G25563T
EPI_ISL_483284 2020-04-29 29864 hCoV-19/USA/CA-ALSR-0659-IPL/2020 United States/California/Imperial
C401T C1059T C3037T C14408T C16762T A23403G G25563T
MT811432 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0939-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C401T C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C401T C1059T C3037T C14408T C16762T A23403G G25563T
EPI_ISL_483425 2020-03-30 29864 hCoV-19/USA/CA-ALSR-0939-SAN/2020 United States/California/San Diego
C466T C3037T C14408T A20268G C22482T A23403G C28854T
MT810873 2020-05-19 29409 SARS-CoV-2/human/USA/SEARCH-1584-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C466T C3037T C14408T A20268G C22482T A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C466T C3037T C14408T A20268G C22482T A23403G C28854T
EPI_ISL_494672 2020-05-19 29865 hCoV-19/USA/CA-ALSR-1584/2020 United States/California/San Diego
C6312A G11083T C13730T C23929T C28311T
EPI_ISL_417401 2020-03-13 29409 hCoV-19/Australia/NSW45/2020 Australia/New South Wales/Sydney
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C6312A G11083T C13730T C23929T C28311T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C6312A G11083T C13730T C23929T C28311T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-
EPI_ISL_416706 2020-03-13 SARS-CoV-2/human/USA/WA-UW168/2020 United States/Washington
EPI_ISL_417403 2020-03-14 29409 hCoV-19/Australia/NSW48/2020 Australia/New South Wales/Sydney
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C6312A G11083T C13730T C23929T C28311T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-
EPI_ISL_507003 2020-03-14 29782 hCoV-19/Singapore/758/2020 Singapore
C683T T1570C C3037T C9430T C14408T A20268G C21742T A23403G C28854T G29024T
MT811229 2020-05-04 29409 SARS-CoV-2/human/USA/SEARCH-0543-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C683T T1570C C3037T C9430T C14408T A20268G C21742T A23403G C28854T G29024T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T C683T T1570C C3037T C9430T C14408T A20268G C21742T A23403G C28854T G29024T
EPI_ISL_483213 2020-05-04 29899 hCoV-19/USA/CA-ALSR-0543-SAN/2020 United States/California/San Diego
C751T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T
MT810604 2020-04-04 29409 SARS-CoV-2/human/USA/SEARCH-1125-CS2/2020 United States/Cruise_Ship_2/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C751T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C751T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T
EPI_ISL_494377 2020-04-04 29868 hCoV-19/USA/CA-ALSR-1125/2020 United States/California
C835T C1059T C1887T C3037T C14408T A23403G G25563T T28110C G29315C
MT811022 2020-04-18 29409 SARS-CoV-2/human/USA/SEARCH-0448-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C835T C1059T C1887T C3037T C14408T A23403G G25563T T28110C G29315C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C835T C1059T C1887T C3037T C14408T A23403G G25563T T28110C G29315C
EPI_ISL_467972 2020-04-18 29903 hCoV-19/USA/CA-SR0448/2020 United States/California/San Diego
C8782T C17470T C26088T T28144C
MT810558 2020-03-26 29409 SARS-CoV-2/human/USA/SEARCH-0425-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C8782T C17470T C26088T T28144C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C8782T C17470T C26088T T28144C
EPI_ISL_467956 2020-03-26 29903 hCoV-19/USA/CA-SR0425/2020 United States/California/San Diego
C8782T C17747T A17858G C18060T A24694T T28144C
MT810553 2020-03-10 29409 SARS-CoV-2/human/USA/SEARCH-0416-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C8782T C17747T A17858G C18060T A24694T T28144C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C8782T C17747T A17858G C18060T A24694T T28144C
EPI_ISL_467951 2020-03-10 29903 hCoV-19/USA/CA-SR0416/2020 United States/California/San Diego
MT810560 2020-03-10 29409 SARS-CoV-2/human/USA/SEARCH-0428-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C8782T C17747T A17858G C18060T A24694T T28144C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C8782T C17747T A17858G C18060T A24694T T28144C
EPI_ISL_467958 2020-03-10 29903 hCoV-19/USA/CA-SR0428/2020 United States/California/San Diego
MT810577 2020-03-16 29409 SARS-CoV-2/human/USA/SEARCH-0455-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C8782T C17747T A17858G C18060T A24694T T28144C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C8782T C17747T A17858G C18060T A24694T T28144C
EPI_ISL_467978 2020-03-16 29903 hCoV-19/USA/CA-SR0455/2020 United States/California/San Diego
MT810571 2020-03-21 29409 SARS-CoV-2/human/USA/SEARCH-0445-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C8782T C17747T A17858G C18060T A24694T T28144C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C8782T C17747T A17858G C18060T A24694T T28144C
EPI_ISL_467970 2020-03-21 29903 hCoV-19/USA/CA-SR0445/2020 United States/California/San Diego
C8782T C17747T A17858G C18060T T28144C
MT810552 2020-03-08 29409 SARS-CoV-2/human/USA/SEARCH-0415-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C8782T C17747T A17858G C18060T T28144C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C8782T C17747T A17858G C18060T T28144C
EPI_ISL_467950 2020-03-08 29903 hCoV-19/USA/CA-SR0415/2020 United States/California/San Diego
MT810580 2020-03-08 29409 SARS-CoV-2/human/USA/SEARCH-0460-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C8782T C17747T A17858G C18060T T28144C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C8782T C17747T A17858G C18060T T28144C
EPI_ISL_467982 2020-03-08 29903 hCoV-19/USA/CA-SR0460/2020 United States/California/San Diego
MT810573 2020-03-10 29409 SARS-CoV-2/human/USA/SEARCH-0449-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C8782T C17747T A17858G C18060T T28144C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C8782T C17747T A17858G C18060T T28144C
EPI_ISL_467973 2020-03-10 29903 hCoV-19/USA/CA-SR0449/2020 United States/California/San Diego
MT811011 2020-04-07 29409 SARS-CoV-2/human/USA/SEARCH-0404-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C8782T C17747T A17858G C18060T T28144C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C8782T C17747T A17858G C18060T T28144C
EPI_ISL_458275 2020-04-07 29903 hCoV-19/USA/CA-SR0404/2020 United States/California/San Diego
C920T C1059T C3037T C14408T A23403G G25563T C25728T
MT810821 2020-03-27 29409 SARS-CoV-2/human/USA/SEARCH-1437-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C920T C1059T C3037T C14408T A23403G G25563T C25728T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T C1059T C3037T C14408T A23403G G25563T C25728T
EPI_ISL_494603 2020-03-27 29864 hCoV-19/USA/CA-ALSR-1437/2020 United States/California/San Diego
C920T C3037T C14408T A20268G A23403G C28854T
MT810665 2020-04-09 29409 SARS-CoV-2/human/USA/SEARCH-1208-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C920T C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C920T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_494438 2020-04-09 29903 hCoV-19/USA/CA-ALSR-1208/2020 United States/California/San Diego
MT810666 2020-04-09 29409 SARS-CoV-2/human/USA/SEARCH-1209-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C920T C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTT1- C241T C920T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_494439 2020-04-09 29892 hCoV-19/USA/CA-ALSR-1209/2020 United States/California/San Diego
MT810667 2020-04-09 29409 SARS-CoV-2/human/USA/SEARCH-1210-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C920T C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C920T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_494440 2020-04-09 29903 hCoV-19/USA/CA-ALSR-1210/2020 United States/California/San Diego
MT810676 2020-04-09 29409 SARS-CoV-2/human/USA/SEARCH-1225-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C920T C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTA1- C241T C920T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_494449 2020-04-09 29891 hCoV-19/USA/CA-ALSR-1225/2020 United States/California/San Diego
MT811212 2020-04-09 29409 SARS-CoV-2/human/USA/SEARCH-0516-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C920T C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATT1- C241T C920T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_483195 2020-04-09 29900 hCoV-19/USA/CA-ALSR-0516-SAN/2020 United States/California/San Diego
MT811478 2020-04-09 29409 SARS-CoV-2/human/USA/SEARCH-1027-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C920T C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
A1- C241T C920T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_483471 2020-04-09 29902 hCoV-19/USA/CA-ALSR-1027-SAN/2020 United States/California/San Diego
MT810585 2020-04-15 29409 SARS-CoV-2/human/USA/SEARCH-0472-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C920T C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_483162 2020-04-15 29865 hCoV-19/USA/CA-ALSR-0472-SAN/2020 United States/California/San Diego
MT810675 2020-04-16 29409 SARS-CoV-2/human/USA/SEARCH-1224-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C920T C3037T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C920T C3037T C14408T A20268G A23403G C28854T
EPI_ISL_494448 2020-04-16 29849 hCoV-19/USA/CA-ALSR-1224/2020 United States/California/San Diego
C920T C3037T C14408T A20268G A23403G T23449C C28854T
MT811194 2020-04-09 29409 SARS-CoV-2/human/USA/SEARCH-0489-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C920T C3037T C14408T A20268G A23403G T23449C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
AT1- C241T C920T C3037T C14408T A20268G A23403G T23449C C28854T
EPI_ISL_483175 2020-04-09 29901 hCoV-19/USA/CA-ALSR-0489-SAN/2020 United States/California/San Diego
MT811466 2020-04-09 29409 SARS-CoV-2/human/USA/SEARCH-1007-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C920T C3037T C14408T A20268G A23403G T23449C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T C3037T C14408T A20268G A23403G T23449C C28854T
EPI_ISL_483459 2020-04-09 29865 hCoV-19/USA/CA-ALSR-1007-SAN/2020 United States/California/San Diego
MT811361 2020-04-16 29409 SARS-CoV-2/human/USA/SEARCH-0773-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C920T C3037T C14408T A20268G A23403G T23449C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C920T C3037T C14408T A20268G A23403G T23449C C28854T
EPI_ISL_483349 2020-04-16 29903 hCoV-19/USA/CA-ALSR-0773-SAN/2020 United States/California/San Diego
C920T C3037T C14408T G15760T A20268G A23403G C28854T
MT811460 2020-04-22 29409 SARS-CoV-2/human/USA/SEARCH-0999-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C920T C3037T C14408T G15760T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C920T C3037T C14408T G15760T A20268G A23403G C28854T
EPI_ISL_483453 2020-04-22 29863 hCoV-19/USA/CA-ALSR-0999-SAN/2020 United States/California/San Diego
C936T C3037T T5158G C14408T A23403G C25614T
MT810610 2020-04-16 29409 SARS-CoV-2/human/USA/SEARCH-1135-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C936T C3037T T5158G C14408T A23403G C25614T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCT1- C241T C936T C3037T T5158G C14408T A23403G C25614T
EPI_ISL_494383 2020-04-16 29886 hCoV-19/USA/CA-ALSR-1135/2020 United States/California/San Diego
C936T C3037T T5158G C14408T A23403G C25614T A26759G
MT811003 2020-04-10 29409 SARS-CoV-2/human/USA/SEARCH-0388-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C936T C3037T T5158G C14408T A23403G C25614T A26759G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T C936T C3037T T5158G C14408T A23403G C25614T A26759G
EPI_ISL_458267 2020-04-10 29903 hCoV-19/USA/CA-SR0388/2020 United States/California/San Diego
C988T C1059T C3037T C14408T A23403G G25563T
MT811191 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0484-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C988T C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C988T C1059T C3037T C14408T A23403G G25563T
EPI_ISL_483172 2020-03-31 29864 hCoV-19/USA/CA-ALSR-0484-SAN/2020 United States/California/San Diego
MT811382 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0803-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- C988T C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C988T C1059T C3037T C14408T A23403G G25563T
EPI_ISL_483370 2020-03-31 29864 hCoV-19/USA/CA-ALSR-0803-SAN/2020 United States/California/San Diego
G11083T C14805T C18086T G23012C G26144T G28842T
MT810836 2020-03-20 29409 SARS-CoV-2/human/USA/SEARCH-1462-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- G11083T C14805T C18086T G23012C G26144T G28842T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTAT1- G11083T C14805T C18086T G23012C G26144T G28842T
EPI_ISL_494618 2020-03-20 29890 hCoV-19/USA/CA-ALSR-1462/2020 United States/California/San Diego
G11083T C14805T G26144T G28842T
MT811567 2020-04-07 29409 SARS-CoV-2/human/JOR/SEARCH-0333-JOR/2020 Jordan/Amman
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- G11083T C14805T G26144T G28842T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
G11083T C14805T G26144T G28842T
EPI_ISL_450186 2020-04-07 29903 hCoV-19/Jordan/SR-0333/2020 Jordan/Amman
G1135T C3037T C4754T C14408T A20268G A23403G C28854T
MT811254 2020-04-15 29409 SARS-CoV-2/human/USA/SEARCH-0582-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- G1135T C3037T C4754T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1135T C3037T C4754T C14408T A20268G A23403G C28854T
EPI_ISL_483238 2020-04-15 29849 hCoV-19/USA/CA-ALSR-0582-SAN/2020 United States/California/San Diego
G1135T C3037T C8655T C13774T C14408T C18115T A20268G A23403G G25049T C28854T
MT810765 2020-04-27 29409 SARS-CoV-2/human/MEX/SEARCH-1691-TIJ/2020 Mexico/Tijuana/BajaCalifornia
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- G1135T C3037T C8655T C13774T C14408T C18115T A20268G A23403G G25049T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G1135T C3037T C8655T C13774T C14408T C18115T A20268G A23403G G25049T C28854T
EPI_ISL_496352 2020-04-27 29854 hCoV-19/Mexico/ALSR-1691/2020 Mexico/Baja California/Tijuana
G1135T C3037T G14229A C14408T C18115T A20268G A23403G G26268T C26735T C28854T
MT810623 2020-04-27 29409 SARS-CoV-2/human/USA/SEARCH-1153-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- G1135T C3037T G14229A C14408T C18115T A20268G A23403G G26268T C26735T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G1135T C3037T G14229A C14408T C18115T A20268G A23403G G26268T C26735T C28854T
EPI_ISL_494396 2020-04-27 29864 hCoV-19/USA/CA-ALSR-1153/2020 United States/California/San Diego
G1135T C3037T G7393A A10028G C10416T C12049T C14408T G14743T A20268G A23403G C25578T C28854T T29293C
MT811484 2020-06-21 29409 SARS-CoV-2/human/USA/SEARCH-1038-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- G1135T C3037T G7393A A10028G C10416T C12049T C14408T G14743T A20268G A23403G C25578T C28854T T29293C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G1135T C3037T G7393A A10028G C10416T C12049T C14408T G14743T A20268G A23403G C25578T C28854T T29293C
EPI_ISL_483477 2020-06-21 29865 hCoV-19/USA/CA-ALSR-1038-SAN/2020 United States/California/San Diego
G1401A A5405G G8131T C8782T C17747T A17858G C18060T T28144C
MT810941 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-0224-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- G1401A A5405G G8131T C8782T C17747T A17858G C18060T T28144C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
G1401A A5405G G8131T C8782T C17747T A17858G C18060T T28144C
EPI_ISL_437576 2020-04-02 29903 hCoV-19/USA/CA-SR0224/2020 United States/California/San Diego
G1659T C3037T C14408T A20268G A23369C A23403G T24076C C27972A C28854T
MT811486 2020-06-21 29409 SARS-CoV-2/human/USA/SEARCH-1042-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- G1659T C3037T C14408T A20268G A23369C A23403G T24076C C27972A C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G1659T C3037T C14408T A20268G A23369C A23403G T24076C C27972A C28854T
EPI_ISL_483479 2020-06-21 29864 hCoV-19/USA/CA-ALSR-1042-SAN/2020 United States/California/San Diego
G2946A C3037T C14408T A20268G A23403G C28332T C28854T
MT811515 2020-06-23 29409 SARS-CoV-2/human/USA/SEARCH-1083-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- G2946A C3037T C14408T A20268G A23403G C28332T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G2946A C3037T C14408T A20268G A23403G C28332T C28854T
EPI_ISL_483510 2020-06-23 29865 hCoV-19/USA/CA-ALSR-1083-SAN/2020 United States/California/San Diego
G431A C1059T G2600A C3037T C7119T C14408T A23403G G25563T T27634C
MT811197 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0494-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- G431A C1059T G2600A C3037T C7119T C14408T A23403G G25563T T27634C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T G431A C1059T G2600A C3037T C7119T C14408T A23403G G25563T T27634C
EPI_ISL_483179 2020-03-31 29856 hCoV-19/USA/CA-ALSR-0494-SAN/2020 United States/California/San Diego
MT811397 2020-03-31 29409 SARS-CoV-2/human/USA/SEARCH-0830-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- G431A C1059T G2600A C3037T C7119T C14408T A23403G G25563T T27634C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G431A C1059T G2600A C3037T C7119T C14408T A23403G G25563T T27634C
EPI_ISL_483386 2020-03-31 29854 hCoV-19/USA/CA-ALSR-0830-SAN/2020 United States/California/San Diego
G526T C1059T C3037T T3526C C14408T C16762T A23403G G25563T
MT811390 2020-03-30 29409 SARS-CoV-2/human/USA/SEARCH-0816-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- G526T C1059T C3037T T3526C C14408T C16762T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G526T C1059T C3037T T3526C C14408T C16762T A23403G G25563T
EPI_ISL_483378 2020-03-30 29849 hCoV-19/USA/CA-ALSR-0816-SAN/2020 United States/California/San Diego
G626T C1059T C1887T C3037T G11761T C14408T G22793T A23403G G25563T
MT810712 2020-05-03 29409 SARS-CoV-2/human/USA/SEARCH-1301-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- G626T C1059T C1887T C3037T G11761T C14408T G22793T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G626T C1059T C1887T C3037T G11761T C14408T G22793T A23403G G25563T
EPI_ISL_494485 2020-05-03 29849 hCoV-19/USA/CA-ALSR-1301/2020 United States/California/San Diego
G7798T C8782T C17747T A17858G C18060T C20148T T28144C
MT810565 2020-03-12 29409 SARS-CoV-2/human/USA/SEARCH-0436-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- G7798T C8782T C17747T A17858G C18060T C20148T T28144C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
G7798T C8782T C17747T A17858G C18060T C20148T T28144C
EPI_ISL_467964 2020-03-12 29903 hCoV-19/USA/CA-SR0436/2020 United States/California/San Diego
G860A C3037T C14408T A20268G T22483C A23403G G23824T C28854T
MT810613 2020-04-16 29409 SARS-CoV-2/human/USA/SEARCH-1141-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- G860A C3037T C14408T A20268G T22483C A23403G G23824T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T G860A C3037T C14408T A20268G T22483C A23403G G23824T C28854T
EPI_ISL_494386 2020-04-16 29903 hCoV-19/USA/CA-ALSR-1141/2020 United States/California/San Diego
G942A C1059T C3037T C14408T A23403G G25563T
MT810828 2020-03-27 29409 SARS-CoV-2/human/USA/SEARCH-1449-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- G942A C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTA1- C241T G942A C1059T C3037T C14408T A23403G G25563T
EPI_ISL_494610 2020-03-27 29899 hCoV-19/USA/CA-ALSR-1449/2020 United States/California/San Diego
MT810996 2020-04-07 29409 SARS-CoV-2/human/USA/SEARCH-0379-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- G942A C1059T C3037T C14408T A23403G G25563T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T G942A C1059T C3037T C14408T A23403G G25563T
EPI_ISL_458260 2020-04-07 29903 hCoV-19/USA/CA-SR0379/2020 United States/California/San Diego
G943A C3037T A9419G C14408T A20268G A23403G G28003T C28854T
MT810946 2020-04-21 29409 SARS-CoV-2/human/USA/SEARCH-0232-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- G943A C3037T A9419G C14408T A20268G A23403G G28003T C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T G943A C3037T A9419G C14408T A20268G A23403G G28003T C28854T
EPI_ISL_437572 2020-04-21 29903 hCoV-19/USA/CA-SR0232/2020 United States/California/San Diego
GTCATGTTA510- C1059T C3037T G3969A C10319T G11083T G14186A C14408T A23403G G25563T C27964T
MT811686 2020-04-04 29400 SARS-CoV-2/human/USA/SEARCH-0174-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- GTCATGTTA510- C1059T C3037T G3969A C10319T G11083T G14186A C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T GTCATGTTA510- C1059T C3037T G3969A C10319T G11083T G14186A C14408T A23403G G25563T C27964T
EPI_ISL_435472 2020-04-04 29894 hCoV-19/USA/LA-SR0174/2020 United States/Louisiana/New Orleans
MT811742 2020-04-04 29400 SARS-CoV-2/human/USA/SEARCH-0320-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- GTCATGTTA510- C1059T C3037T G3969A C10319T G11083T G14186A C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T GTCATGTTA510- C1059T C3037T G3969A C10319T G11083T G14186A C14408T A23403G G25563T C27964T
EPI_ISL_450175 2020-04-04 29894 hCoV-19/USA/LA-SR0320/2020 United States/Louisiana/New Orleans
GTTATG515- C1059T C3037T C5467T C14408T A23403G G25563T T27863C T28135C
MT810566 2020-03-21 29403 SARS-CoV-2/human/USA/SEARCH-0438-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- GTTATG515- C1059T C3037T C5467T C14408T A23403G G25563T T27863C T28135C CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T GTTATG515- C1059T C3037T C5467T C14408T A23403G G25563T T27863C T28135C
EPI_ISL_467965 2020-03-21 29897 hCoV-19/USA/CA-SR0438/2020 United States/California/San Diego
T1438C C1457T C3037T C14408T A20268G A23403G T24076C C28854T
MT810626 2020-04-27 29409 SARS-CoV-2/human/USA/SEARCH-1156-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- T1438C C1457T C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACC1- C241T T1438C C1457T C3037T C14408T A20268G A23403G T24076C C28854T
EPI_ISL_494399 2020-04-27 29887 hCoV-19/USA/CA-ALSR-1156/2020 United States/California/San Diego
T1851C C3037T C7834T C14408T A20268G A23403G C28854T
MT810863 2020-05-11 29409 SARS-CoV-2/human/USA/SEARCH-1566-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- T1851C C3037T C7834T C14408T A20268G A23403G C28854T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1851C C3037T C7834T C14408T A20268G A23403G C28854T
EPI_ISL_494662 2020-05-11 29873 hCoV-19/USA/CA-ALSR-1566/2020 United States/California/San Diego
T3011C C3037T G5704T C14408T G22205T G22484T A23403G G23611T T27869C T28853G
MT811514 2020-06-22 29409 SARS-CoV-2/human/USA/SEARCH-1082-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- T3011C C3037T G5704T C14408T G22205T G22484T A23403G G23611T T27869C T28853G CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T T3011C C3037T G5704T C14408T G22205T G22484T A23403G G23611T T27869C T28853G
EPI_ISL_483509 2020-06-22 29864 hCoV-19/USA/CA-ALSR-1082-SAN/2020 United States/California/San Diego
T469C C1059T C3037T C9319A C10319T C12085T C14408T A23403G C23506T G25563T C27964T
MT811707 2020-04-02 29409 SARS-CoV-2/human/USA/SEARCH-0277-NBG/2020 United States/New Orleans/Louisiana
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- T469C C1059T C3037T C9319A C10319T C12085T C14408T A23403G C23506T G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
C241T T469C C1059T C3037T C9319A C10319T C12085T C14408T A23403G C23506T G25563T C27964T
EPI_ISL_445132 2020-04-02 29903 hCoV-19/USA/LA-SR0277/2020 United States/Louisiana/New Orleans
T595C C1059T G2210A C3037T G6008A T6654C T9784C C11074T C12008T G12662A C14408T A23403G C23435T G25563T C25626G G26391A C26801T G28931A
MT811521 2020-06-15 29409 SARS-CoV-2/human/USA/SEARCH-1089-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- T595C C1059T G2210A C3037T G6008A T6654C T9784C C11074T C12008T G12662A C14408T A23403G C23435T G25563T C25626G G26391A C26801T G28931A CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T T595C C1059T G2210A C3037T G6008A T6654C T9784C C11074T C12008T G12662A C14408T A23403G C23435T G25563T C25626G G26391A C26801T G28931A
EPI_ISL_483516 2020-06-15 29864 hCoV-19/USA/CA-ALSR-1089-SAN/2020 United States/California/San Diego
T833C C1059T C3037T C14408T A23403G G25563T C27964T
MT810479 2020-03-12 29409 SARS-CoV-2/human/USA/SEARCH-1380-SAN/2020 United States/San Diego/California
ATTAAAGGTT---265-bases-total---GAAAGGTAAG1- T833C C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAA---229-bases-total---AAAAAAAAAA29675-
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T
EPI_ISL_494571 2020-03-12 29856 hCoV-19/USA/CA-ALSR-1380/2020 United States/California/San Diego